Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 AC007663.1-201ENST00000438948 1240 ntBASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 AC009065.1-201ENST00000564055 1225 ntBASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 AP000525.1-201ENST00000608286 694 ntBASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 AC112497.1-201ENST00000624824 639 ntBASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 AC116562.4-202ENST00000641738 218 ntBASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHA3Q9Y5H8 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 TSPY7P-201ENST00000431358 1114 ntBASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 AC008550.1-201ENST00000511500 884 ntBASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 MIR4785-201ENST00000585005 73 ntBASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PCDHA3Q9Y5H8 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 AL390955.1-201ENST00000428694 934 ntBASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
PCDHA3Q9Y5H8 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms