Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 PP12613-201ENST00000424958 2230 ntBASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 AC009065.1-201ENST00000564055 1225 ntBASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 Z99916.2-201ENST00000604037 246 ntBASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 AC112497.1-201ENST00000624824 639 ntBASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIMA1Q9UHB6 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 RBM17P1-201ENST00000453646 1190 ntBASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC19.93■□□□□ 0.78
LIMA1Q9UHB6 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 DUTP2-201ENST00000519164 463 ntBASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMA1Q9UHB6 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 BX088651.1-201ENST00000540551 451 ntBASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 AC108860.2-201ENST00000562760 2183 ntBASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
LIMA1Q9UHB6 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.9■□□□□ 0.78
LIMA1Q9UHB6 UNC93B2-201ENST00000285383 730 ntBASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms