Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 AC112497.1-201ENST00000624824 639 ntBASIC16.32■□□□□ 0.2
VSX1Q9NZR4 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VSX1Q9NZR4 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.3■□□□□ 0.2
VSX1Q9NZR4 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.29■□□□□ 0.2
VSX1Q9NZR4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms