Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDH9Q9HC56 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.85■□□□□ 0.61
PCDH9Q9HC56 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 AC009102.3-201ENST00000623118 1491 ntBASIC18.85■□□□□ 0.61
PCDH9Q9HC56 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 MIR149-201ENST00000384879 89 ntBASIC18.85■□□□□ 0.61
PCDH9Q9HC56 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 ECEL1P3-201ENST00000427961 737 ntBASIC18.85■□□□□ 0.61
PCDH9Q9HC56 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 AL512604.3-201ENST00000569583 964 ntBASIC18.85■□□□□ 0.61
PCDH9Q9HC56 WWOX-216ENST00000569818 525 ntBASIC18.85■□□□□ 0.61
PCDH9Q9HC56 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCDH9Q9HC56 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 HOXB1-202ENST00000577092 1414 ntBASIC18.84■□□□□ 0.61
PCDH9Q9HC56 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 AC005363.2-201ENST00000618631 242 ntBASIC18.84■□□□□ 0.61
PCDH9Q9HC56 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.84■□□□□ 0.61
PCDH9Q9HC56 AC020916.1-201ENST00000587762 1774 ntBASIC18.83■□□□□ 0.61
PCDH9Q9HC56 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PCDH9Q9HC56 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PCDH9Q9HC56 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PCDH9Q9HC56 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PCDH9Q9HC56 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
PCDH9Q9HC56 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
PCDH9Q9HC56 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PCDH9Q9HC56 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PCDH9Q9HC56 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.83■□□□□ 0.61
PCDH9Q9HC56 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
PCDH9Q9HC56 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PCDH9Q9HC56 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.83■□□□□ 0.6
PCDH9Q9HC56 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCDH9Q9HC56 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PCDH9Q9HC56 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.83■□□□□ 0.6
PCDH9Q9HC56 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
PCDH9Q9HC56 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.83■□□□□ 0.6
PCDH9Q9HC56 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.83■□□□□ 0.6
PCDH9Q9HC56 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCDH9Q9HC56 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCDH9Q9HC56 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.83■□□□□ 0.6
PCDH9Q9HC56 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.83■□□□□ 0.6
PCDH9Q9HC56 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCDH9Q9HC56 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.83■□□□□ 0.6
PCDH9Q9HC56 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PCDH9Q9HC56 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms