Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF541Q9H0D2 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF541Q9H0D2 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
ZNF541Q9H0D2 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.77■■□□□ 1.08
ZNF541Q9H0D2 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.77■■□□□ 1.08
ZNF541Q9H0D2 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
ZNF541Q9H0D2 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC21.77■■□□□ 1.07
ZNF541Q9H0D2 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC21.77■■□□□ 1.07
ZNF541Q9H0D2 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC21.77■■□□□ 1.07
ZNF541Q9H0D2 AL078644.1-201ENST00000609881 752 ntBASIC21.77■■□□□ 1.07
ZNF541Q9H0D2 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC21.77■■□□□ 1.07
ZNF541Q9H0D2 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC21.77■■□□□ 1.07
ZNF541Q9H0D2 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
ZNF541Q9H0D2 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.77■■□□□ 1.07
ZNF541Q9H0D2 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 AC002310.6-201ENST00000624451 1377 ntBASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 AC004817.3-201ENST00000602957 2129 ntBASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 LHX6-205ENST00000464484 666 ntTSL 2 BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 AP002472.1-201ENST00000577490 586 ntBASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF541Q9H0D2 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 MIR770-201ENST00000390219 98 ntBASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 PNMT-202ENST00000394246 821 ntTSL 2 BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 KRT18P65-201ENST00000439811 1286 ntBASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 AC136632.2-201ENST00000512891 861 ntBASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 AC006557.2-201ENST00000592985 1240 ntBASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF541Q9H0D2 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 SYS1-203ENST00000414310 795 ntTSL 3 BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 AC112698.1-201ENST00000510299 916 ntBASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 AC018845.2-201ENST00000568326 409 ntBASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 AL513190.1-201ENST00000621254 727 ntBASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF541Q9H0D2 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
ZNF541Q9H0D2 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms