Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 RCN1P2-201ENST00000398357 915 ntBASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 POM121L3P-201ENST00000419331 1163 ntBASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PAAF1Q9BRP4 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 SAPCD2P3-201ENST00000455031 850 ntBASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 AC132938.6-201ENST00000623828 1655 ntBASIC19.4■□□□□ 0.7
PAAF1Q9BRP4 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.39■□□□□ 0.7
PAAF1Q9BRP4 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.39■□□□□ 0.7
PAAF1Q9BRP4 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
PAAF1Q9BRP4 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
PAAF1Q9BRP4 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
PAAF1Q9BRP4 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 AC098818.2-201ENST00000564925 2320 ntBASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 AL591684.3-201ENST00000605187 298 ntBASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 AC114341.1-201ENST00000618070 349 ntBASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 TP73-AS1-207ENST00000624167 988 ntBASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 TP73-AS1-210ENST00000637775 1455 ntBASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 GMCL1P1-201ENST00000463439 1581 ntBASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PAAF1Q9BRP4 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PAAF1Q9BRP4 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PAAF1Q9BRP4 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
PAAF1Q9BRP4 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PAAF1Q9BRP4 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PAAF1Q9BRP4 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PAAF1Q9BRP4 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PAAF1Q9BRP4 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PAAF1Q9BRP4 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.38■□□□□ 0.69
PAAF1Q9BRP4 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.38■□□□□ 0.69
PAAF1Q9BRP4 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.38■□□□□ 0.69
PAAF1Q9BRP4 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms