Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.82■□□□□ 0.44
CFAP54Q96N23 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 PARP8-206ENST00000503665 572 ntTSL 4 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CFAP54Q96N23 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CFAP54Q96N23 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CFAP54Q96N23 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CFAP54Q96N23 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CFAP54Q96N23 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CFAP54Q96N23 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.81■□□□□ 0.44
CFAP54Q96N23 AL109659.2-201ENST00000606809 1674 ntBASIC17.81■□□□□ 0.44
CFAP54Q96N23 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CFAP54Q96N23 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CFAP54Q96N23 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CFAP54Q96N23 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CFAP54Q96N23 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.81■□□□□ 0.44
CFAP54Q96N23 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CFAP54Q96N23 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CFAP54Q96N23 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CFAP54Q96N23 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CFAP54Q96N23 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CFAP54Q96N23 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CFAP54Q96N23 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CFAP54Q96N23 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CFAP54Q96N23 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.81■□□□□ 0.44
CFAP54Q96N23 TERF1P3-201ENST00000505638 1227 ntBASIC17.81■□□□□ 0.44
CFAP54Q96N23 AL138831.2-201ENST00000606564 490 ntBASIC17.81■□□□□ 0.44
CFAP54Q96N23 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CFAP54Q96N23 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CFAP54Q96N23 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CFAP54Q96N23 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.8■□□□□ 0.44
CFAP54Q96N23 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.8■□□□□ 0.44
CFAP54Q96N23 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.8■□□□□ 0.44
CFAP54Q96N23 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CFAP54Q96N23 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CFAP54Q96N23 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CFAP54Q96N23 AC009237.14-201ENST00000609975 1594 ntBASIC17.8■□□□□ 0.44
CFAP54Q96N23 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CFAP54Q96N23 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CFAP54Q96N23 LAGE3P1-201ENST00000425356 484 ntBASIC17.8■□□□□ 0.44
CFAP54Q96N23 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.8■□□□□ 0.44
CFAP54Q96N23 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CFAP54Q96N23 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CFAP54Q96N23 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CFAP54Q96N23 GPR89P-201ENST00000407924 1495 ntBASIC17.8■□□□□ 0.44
CFAP54Q96N23 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CFAP54Q96N23 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CFAP54Q96N23 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
CFAP54Q96N23 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CFAP54Q96N23 ABCD1P5-201ENST00000445663 754 ntBASIC17.8■□□□□ 0.44
CFAP54Q96N23 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CFAP54Q96N23 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CFAP54Q96N23 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CFAP54Q96N23 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CFAP54Q96N23 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CFAP54Q96N23 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.79■□□□□ 0.44
CFAP54Q96N23 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CFAP54Q96N23 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CFAP54Q96N23 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.79■□□□□ 0.44
CFAP54Q96N23 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.79■□□□□ 0.44
CFAP54Q96N23 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CFAP54Q96N23 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CFAP54Q96N23 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CFAP54Q96N23 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.79■□□□□ 0.44
CFAP54Q96N23 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CFAP54Q96N23 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CFAP54Q96N23 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.79■□□□□ 0.44
CFAP54Q96N23 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CFAP54Q96N23 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.79■□□□□ 0.44
CFAP54Q96N23 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.79■□□□□ 0.44
CFAP54Q96N23 SNX12-206ENST00000622259 661 ntTSL 5 BASIC17.79■□□□□ 0.44
CFAP54Q96N23 AC008761.3-201ENST00000624803 892 ntBASIC17.79■□□□□ 0.44
CFAP54Q96N23 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CFAP54Q96N23 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
CFAP54Q96N23 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CFAP54Q96N23 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CFAP54Q96N23 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CFAP54Q96N23 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CFAP54Q96N23 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CFAP54Q96N23 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CFAP54Q96N23 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.78■□□□□ 0.44
CFAP54Q96N23 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.78■□□□□ 0.44
CFAP54Q96N23 CR383656.12-201ENST00000549567 513 ntBASIC17.78■□□□□ 0.44
CFAP54Q96N23 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CFAP54Q96N23 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CFAP54Q96N23 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CFAP54Q96N23 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC17.78■□□□□ 0.44
CFAP54Q96N23 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.78■□□□□ 0.44
CFAP54Q96N23 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.78■□□□□ 0.44
CFAP54Q96N23 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CFAP54Q96N23 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CFAP54Q96N23 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.78■□□□□ 0.44
CFAP54Q96N23 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.78■□□□□ 0.44
CFAP54Q96N23 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms