Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SLC44A3Q8N4M1 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SLC44A3Q8N4M1 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SLC44A3Q8N4M1 AC099343.3-201ENST00000605834 2503 ntBASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 AC040169.1-201ENST00000565382 521 ntBASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 AC027796.2-201ENST00000575326 344 ntBASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 AC008735.5-201ENST00000623544 497 ntBASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 AC083906.6-201ENST00000641366 219 ntBASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 AC079781.4-201ENST00000641908 219 ntBASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.64■□□□□ 0.57
SLC44A3Q8N4M1 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 DNAJB3-201ENST00000446806 729 ntBASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 LINC02084-201ENST00000606069 1096 ntBASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.63■□□□□ 0.57
SLC44A3Q8N4M1 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 AL024508.2-201ENST00000607749 1894 ntBASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SLC44A3Q8N4M1 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 SDHAP2-201ENST00000455183 2001 ntBASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SLC44A3Q8N4M1 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms