Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP4Q8N3C7 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 MYLKP1-201ENST00000509077 1580 ntBASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 MIR564-202ENST00000385049 94 ntBASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 AC135776.1-201ENST00000319817 2481 ntBASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLIP4Q8N3C7 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 MCCD1P1-208ENST00000445732 328 ntBASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 AP003071.4-201ENST00000562276 1284 ntBASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 AL162741.1-201ENST00000565563 1558 ntBASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLIP4Q8N3C7 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 AC008550.1-201ENST00000511500 884 ntBASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 KRT18P41-201ENST00000518924 1277 ntBASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLIP4Q8N3C7 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms