Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS52Q8N1B4 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 BCL2-203ENST00000589955 5011 ntBASIC19.77■□□□□ 0.76
VPS52Q8N1B4 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS52Q8N1B4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
VPS52Q8N1B4 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 AL161938.1-201ENST00000569833 2180 ntBASIC19.76■□□□□ 0.75
VPS52Q8N1B4 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 AC074051.2-201ENST00000565115 352 ntBASIC19.76■□□□□ 0.75
VPS52Q8N1B4 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 GPR32P1-201ENST00000601788 811 ntBASIC19.76■□□□□ 0.75
VPS52Q8N1B4 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS52Q8N1B4 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 AP000347.1-202ENST00000435868 847 ntBASIC19.75■□□□□ 0.75
VPS52Q8N1B4 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 AC104692.2-201ENST00000603054 253 ntBASIC19.75■□□□□ 0.75
VPS52Q8N1B4 AC138894.3-201ENST00000603787 634 ntBASIC19.75■□□□□ 0.75
VPS52Q8N1B4 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.75■□□□□ 0.75
VPS52Q8N1B4 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 LINC00167-201ENST00000530583 1419 ntBASIC19.75■□□□□ 0.75
VPS52Q8N1B4 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS52Q8N1B4 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS52Q8N1B4 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms