Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 AC244107.1-201ENST00000442033 332 ntBASIC12.65□□□□□ -0.38
CSMD3Q7Z407 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 AC092865.6-201ENST00000642101 219 ntBASIC12.65□□□□□ -0.38
CSMD3Q7Z407 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 AP002414.3-201ENST00000589352 1468 ntBASIC12.65□□□□□ -0.38
CSMD3Q7Z407 AC112777.1-201ENST00000540175 1423 ntBASIC12.65□□□□□ -0.38
CSMD3Q7Z407 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 AC108751.1-201ENST00000490852 363 ntBASIC12.65□□□□□ -0.38
CSMD3Q7Z407 RNA5SP416-201ENST00000516838 111 ntBASIC12.65□□□□□ -0.38
CSMD3Q7Z407 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 AL139400.1-201ENST00000366220 510 ntBASIC12.65□□□□□ -0.38
CSMD3Q7Z407 AC254562.1-201ENST00000417586 456 ntBASIC12.65□□□□□ -0.38
CSMD3Q7Z407 GREM1-201ENST00000560677 623 ntTSL 4 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
CSMD3Q7Z407 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
CSMD3Q7Z407 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.39
CSMD3Q7Z407 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 PMPCAP1-201ENST00000508114 1576 ntBASIC12.64□□□□□ -0.39
CSMD3Q7Z407 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 PDPK2P-202ENST00000562415 1191 ntBASIC12.64□□□□□ -0.39
CSMD3Q7Z407 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 AL024508.2-201ENST00000607749 1894 ntBASIC12.64□□□□□ -0.39
CSMD3Q7Z407 UROS-202ENST00000368778 1556 ntTSL 2 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 MIR1199-201ENST00000621445 119 ntBASIC12.64□□□□□ -0.39
CSMD3Q7Z407 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC12.64□□□□□ -0.39
CSMD3Q7Z407 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 INIP-202ENST00000374236 874 ntTSL 2 BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 BCRP1-201ENST00000444246 691 ntBASIC12.63□□□□□ -0.39
CSMD3Q7Z407 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 AC239800.4-201ENST00000603712 296 ntBASIC12.63□□□□□ -0.39
CSMD3Q7Z407 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CSMD3Q7Z407 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms