Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC24.22■■□□□ 1.47
USP54Q70EL1 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC24.22■■□□□ 1.47
USP54Q70EL1 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC24.22■■□□□ 1.47
USP54Q70EL1 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC24.22■■□□□ 1.47
USP54Q70EL1 FAM197Y3-203ENST00000618346 717 ntBASIC24.22■■□□□ 1.47
USP54Q70EL1 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP54Q70EL1 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP54Q70EL1 GMCL1P1-201ENST00000463439 1581 ntBASIC24.22■■□□□ 1.47
USP54Q70EL1 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
USP54Q70EL1 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC24.22■■□□□ 1.47
USP54Q70EL1 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP54Q70EL1 FUOM-202ENST00000368551 628 ntTSL 3 BASIC24.21■■□□□ 1.47
USP54Q70EL1 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC24.21■■□□□ 1.47
USP54Q70EL1 AP000867.4-201ENST00000641616 219 ntBASIC24.21■■□□□ 1.47
USP54Q70EL1 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC24.21■■□□□ 1.47
USP54Q70EL1 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP54Q70EL1 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
USP54Q70EL1 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP54Q70EL1 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
USP54Q70EL1 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
USP54Q70EL1 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC24.21■■□□□ 1.47
USP54Q70EL1 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC24.21■■□□□ 1.47
USP54Q70EL1 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC24.21■■□□□ 1.47
USP54Q70EL1 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USP54Q70EL1 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC24.21■■□□□ 1.47
USP54Q70EL1 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
USP54Q70EL1 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
USP54Q70EL1 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.47
USP54Q70EL1 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
USP54Q70EL1 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
USP54Q70EL1 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
USP54Q70EL1 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.46
USP54Q70EL1 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
USP54Q70EL1 AC073621.1-201ENST00000392730 636 ntBASIC24.2■■□□□ 1.46
USP54Q70EL1 AL591424.1-201ENST00000442569 1213 ntBASIC24.2■■□□□ 1.46
USP54Q70EL1 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC24.2■■□□□ 1.46
USP54Q70EL1 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC24.2■■□□□ 1.46
USP54Q70EL1 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP54Q70EL1 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC24.19■■□□□ 1.46
USP54Q70EL1 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP54Q70EL1 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP54Q70EL1 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP54Q70EL1 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP54Q70EL1 MED15P5-201ENST00000423150 992 ntBASIC24.19■■□□□ 1.46
USP54Q70EL1 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC24.19■■□□□ 1.46
USP54Q70EL1 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
USP54Q70EL1 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC24.19■■□□□ 1.46
USP54Q70EL1 AP002414.3-201ENST00000589352 1468 ntBASIC24.19■■□□□ 1.46
USP54Q70EL1 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USP54Q70EL1 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
USP54Q70EL1 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP54Q70EL1 FAM220CP-201ENST00000395253 831 ntBASIC24.18■■□□□ 1.46
USP54Q70EL1 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
USP54Q70EL1 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC24.18■■□□□ 1.46
USP54Q70EL1 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC24.18■■□□□ 1.46
USP54Q70EL1 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC24.18■■□□□ 1.46
USP54Q70EL1 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP54Q70EL1 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
USP54Q70EL1 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC24.18■■□□□ 1.46
USP54Q70EL1 AC097374.2-201ENST00000618617 1306 ntBASIC24.18■■□□□ 1.46
USP54Q70EL1 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
USP54Q70EL1 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP54Q70EL1 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC24.18■■□□□ 1.46
USP54Q70EL1 SOD2-201ENST00000337404 991 ntTSL 2 BASIC24.18■■□□□ 1.46
USP54Q70EL1 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USP54Q70EL1 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
USP54Q70EL1 RNA5SP415-201ENST00000517246 115 ntBASIC24.18■■□□□ 1.46
USP54Q70EL1 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC24.18■■□□□ 1.46
USP54Q70EL1 TERC-201ENST00000602385 541 ntBASIC24.18■■□□□ 1.46
USP54Q70EL1 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
USP54Q70EL1 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC24.17■■□□□ 1.46
USP54Q70EL1 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP54Q70EL1 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP54Q70EL1 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC24.17■■□□□ 1.46
USP54Q70EL1 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC24.17■■□□□ 1.46
USP54Q70EL1 HLA-J-201ENST00000462773 1622 ntBASIC24.17■■□□□ 1.46
USP54Q70EL1 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP54Q70EL1 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC24.17■■□□□ 1.46
USP54Q70EL1 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC24.17■■□□□ 1.46
USP54Q70EL1 AC092910.1-201ENST00000482027 1129 ntBASIC24.17■■□□□ 1.46
USP54Q70EL1 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC24.17■■□□□ 1.46
USP54Q70EL1 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC24.17■■□□□ 1.46
USP54Q70EL1 COX5A-204ENST00000567270 579 ntTSL 3 BASIC24.17■■□□□ 1.46
USP54Q70EL1 NKAPP1-205ENST00000585790 367 ntBASIC24.17■■□□□ 1.46
USP54Q70EL1 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
USP54Q70EL1 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC24.17■■□□□ 1.46
USP54Q70EL1 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC24.17■■□□□ 1.46
USP54Q70EL1 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC24.16■■□□□ 1.46
USP54Q70EL1 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP54Q70EL1 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
USP54Q70EL1 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC24.16■■□□□ 1.46
USP54Q70EL1 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
USP54Q70EL1 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC24.16■■□□□ 1.46
USP54Q70EL1 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC24.16■■□□□ 1.46
USP54Q70EL1 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC24.16■■□□□ 1.46
USP54Q70EL1 MIR1233-2-201ENST00000408138 82 ntBASIC24.16■■□□□ 1.46
USP54Q70EL1 MIR1233-1-201ENST00000408722 82 ntBASIC24.16■■□□□ 1.46
USP54Q70EL1 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC24.16■■□□□ 1.46
USP54Q70EL1 AC092865.5-201ENST00000545435 363 ntBASIC24.16■■□□□ 1.46
USP54Q70EL1 CIPC-205ENST00000555437 566 ntTSL 3 BASIC24.16■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms