Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP53Q70EK8 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.66■□□□□ 0.42
USP53Q70EK8 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.66■□□□□ 0.42
USP53Q70EK8 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP53Q70EK8 RN7SL606P-201ENST00000472779 293 ntBASIC17.66■□□□□ 0.42
USP53Q70EK8 KRT18P41-201ENST00000518924 1277 ntBASIC17.66■□□□□ 0.42
USP53Q70EK8 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP53Q70EK8 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.66■□□□□ 0.42
USP53Q70EK8 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.66■□□□□ 0.42
USP53Q70EK8 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.66■□□□□ 0.42
USP53Q70EK8 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.66■□□□□ 0.42
USP53Q70EK8 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.66■□□□□ 0.42
USP53Q70EK8 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP53Q70EK8 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
USP53Q70EK8 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP53Q70EK8 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP53Q70EK8 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP53Q70EK8 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP53Q70EK8 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.66■□□□□ 0.42
USP53Q70EK8 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP53Q70EK8 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP53Q70EK8 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP53Q70EK8 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP53Q70EK8 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP53Q70EK8 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP53Q70EK8 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
USP53Q70EK8 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.65■□□□□ 0.42
USP53Q70EK8 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
USP53Q70EK8 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.65■□□□□ 0.42
USP53Q70EK8 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.65■□□□□ 0.42
USP53Q70EK8 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.65■□□□□ 0.42
USP53Q70EK8 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.65■□□□□ 0.42
USP53Q70EK8 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.65■□□□□ 0.42
USP53Q70EK8 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.65■□□□□ 0.42
USP53Q70EK8 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
USP53Q70EK8 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.65■□□□□ 0.42
USP53Q70EK8 AC009078.2-202ENST00000463353 338 ntBASIC17.65■□□□□ 0.42
USP53Q70EK8 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.65■□□□□ 0.42
USP53Q70EK8 AC004263.2-201ENST00000617183 678 ntBASIC17.65■□□□□ 0.42
USP53Q70EK8 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.65■□□□□ 0.42
USP53Q70EK8 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
USP53Q70EK8 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.65■□□□□ 0.42
USP53Q70EK8 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.65■□□□□ 0.42
USP53Q70EK8 AL138781.2-201ENST00000617896 1843 ntBASIC17.65■□□□□ 0.42
USP53Q70EK8 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.65■□□□□ 0.42
USP53Q70EK8 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP53Q70EK8 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
USP53Q70EK8 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
USP53Q70EK8 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
USP53Q70EK8 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.64■□□□□ 0.42
USP53Q70EK8 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
USP53Q70EK8 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.64■□□□□ 0.42
USP53Q70EK8 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
USP53Q70EK8 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
USP53Q70EK8 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USP53Q70EK8 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.64■□□□□ 0.41
USP53Q70EK8 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP53Q70EK8 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP53Q70EK8 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP53Q70EK8 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.64■□□□□ 0.41
USP53Q70EK8 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.64■□□□□ 0.41
USP53Q70EK8 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.64■□□□□ 0.41
USP53Q70EK8 AL160237.2-201ENST00000556165 472 ntBASIC17.64■□□□□ 0.41
USP53Q70EK8 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.64■□□□□ 0.41
USP53Q70EK8 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
USP53Q70EK8 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP53Q70EK8 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
USP53Q70EK8 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP53Q70EK8 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP53Q70EK8 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USP53Q70EK8 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP53Q70EK8 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP53Q70EK8 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP53Q70EK8 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
USP53Q70EK8 KRT89P-201ENST00000620027 1478 ntBASIC17.63■□□□□ 0.41
USP53Q70EK8 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.63■□□□□ 0.41
USP53Q70EK8 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP53Q70EK8 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP53Q70EK8 AC091607.1-201ENST00000490318 1060 ntBASIC17.63■□□□□ 0.41
USP53Q70EK8 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP53Q70EK8 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.63■□□□□ 0.41
USP53Q70EK8 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.63■□□□□ 0.41
USP53Q70EK8 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.63■□□□□ 0.41
USP53Q70EK8 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms