Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 CRYGFP-201ENST00000418459 633 ntBASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 AL023803.3-201ENST00000615559 522 ntBASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 ITM2C-210ENST00000620962 501 ntBASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LRIF1Q5T3J3 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.21■□□□□ 0.34
LRIF1Q5T3J3 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.21■□□□□ 0.34
LRIF1Q5T3J3 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
LRIF1Q5T3J3 PRORSD1P-202ENST00000563365 2154 ntBASIC17.21■□□□□ 0.34
LRIF1Q5T3J3 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 ABHD17AP1-201ENST00000358206 933 ntBASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 RPS2P55-201ENST00000397318 883 ntBASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 AC107956.1-201ENST00000494359 873 ntBASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 AC113410.3-201ENST00000623366 203 ntBASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 AL024508.2-201ENST00000607749 1894 ntBASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 AC139713.2-201ENST00000641328 2723 ntBASIC17.2■□□□□ 0.34
LRIF1Q5T3J3 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 AC090340.1-201ENST00000620778 4980 ntBASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 AC012618.2-201ENST00000428058 849 ntBASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 AC009065.1-201ENST00000564055 1225 ntBASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 MIR3180-4-201ENST00000582223 153 ntBASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 CR769767.2-201ENST00000622735 460 ntBASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LRIF1Q5T3J3 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms