Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 AC096582.2-201ENST00000510860 516 ntBASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNFT1Q5M7Z0 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 RCN1P2-201ENST00000398357 915 ntBASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 AL591684.3-201ENST00000605187 298 ntBASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 AC114341.1-201ENST00000618070 349 ntBASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 TP73-AS1-207ENST00000624167 988 ntBASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNFT1Q5M7Z0 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 MTCL1P1-201ENST00000446207 792 ntBASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 AC009154.2-201ENST00000621177 724 ntBASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNFT1Q5M7Z0 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RNFT1Q5M7Z0 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
RNFT1Q5M7Z0 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
RNFT1Q5M7Z0 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNFT1Q5M7Z0 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNFT1Q5M7Z0 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNFT1Q5M7Z0 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNFT1Q5M7Z0 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RNFT1Q5M7Z0 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RNFT1Q5M7Z0 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms