Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP41Q3LFD5 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
USP41Q3LFD5 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.38■□□□□ 0.69
USP41Q3LFD5 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.38■□□□□ 0.69
USP41Q3LFD5 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.38■□□□□ 0.69
USP41Q3LFD5 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
USP41Q3LFD5 MIR5100-201ENST00000579544 119 ntBASIC19.38■□□□□ 0.69
USP41Q3LFD5 AL591684.3-201ENST00000605187 298 ntBASIC19.38■□□□□ 0.69
USP41Q3LFD5 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP41Q3LFD5 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
USP41Q3LFD5 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP41Q3LFD5 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
USP41Q3LFD5 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
USP41Q3LFD5 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 AC026471.1-201ENST00000564629 3026 ntBASIC19.37■□□□□ 0.69
USP41Q3LFD5 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 AP000347.1-202ENST00000435868 847 ntBASIC19.37■□□□□ 0.69
USP41Q3LFD5 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 AC068472.1-201ENST00000474589 881 ntBASIC19.37■□□□□ 0.69
USP41Q3LFD5 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 AF238378.1-201ENST00000526806 358 ntBASIC19.37■□□□□ 0.69
USP41Q3LFD5 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
USP41Q3LFD5 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP41Q3LFD5 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
USP41Q3LFD5 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.36■□□□□ 0.69
USP41Q3LFD5 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
USP41Q3LFD5 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.36■□□□□ 0.69
USP41Q3LFD5 MRPL3P1-201ENST00000400109 1033 ntBASIC19.36■□□□□ 0.69
USP41Q3LFD5 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.36■□□□□ 0.69
USP41Q3LFD5 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.36■□□□□ 0.69
USP41Q3LFD5 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.36■□□□□ 0.69
USP41Q3LFD5 AC096582.2-201ENST00000510860 516 ntBASIC19.36■□□□□ 0.69
USP41Q3LFD5 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 AC114341.1-201ENST00000618070 349 ntBASIC19.36■□□□□ 0.69
USP41Q3LFD5 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.36■□□□□ 0.69
USP41Q3LFD5 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
USP41Q3LFD5 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
USP41Q3LFD5 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USP41Q3LFD5 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.35■□□□□ 0.69
USP41Q3LFD5 AP000974.1-201ENST00000623909 2387 ntBASIC19.35■□□□□ 0.69
USP41Q3LFD5 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
USP41Q3LFD5 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.35■□□□□ 0.69
USP41Q3LFD5 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.35■□□□□ 0.69
USP41Q3LFD5 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USP41Q3LFD5 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.35■□□□□ 0.69
USP41Q3LFD5 AC079776.4-201ENST00000511039 504 ntBASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms