Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
RNF4P78317 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 ESPNP-201ENST00000270691 2015 ntBASIC16.87■□□□□ 0.29
RNF4P78317 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.87■□□□□ 0.29
RNF4P78317 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
RNF4P78317 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.87■□□□□ 0.29
RNF4P78317 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
RNF4P78317 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.87■□□□□ 0.29
RNF4P78317 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.87■□□□□ 0.29
RNF4P78317 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.87■□□□□ 0.29
RNF4P78317 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.87■□□□□ 0.29
RNF4P78317 AC093458.2-201ENST00000623150 629 ntBASIC16.87■□□□□ 0.29
RNF4P78317 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
RNF4P78317 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.87■□□□□ 0.29
RNF4P78317 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
RNF4P78317 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.87■□□□□ 0.29
RNF4P78317 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.87■□□□□ 0.29
RNF4P78317 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RNF4P78317 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
RNF4P78317 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.86■□□□□ 0.29
RNF4P78317 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.86■□□□□ 0.29
RNF4P78317 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.86■□□□□ 0.29
RNF4P78317 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.86■□□□□ 0.29
RNF4P78317 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.86■□□□□ 0.29
RNF4P78317 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.86■□□□□ 0.29
RNF4P78317 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.86■□□□□ 0.29
RNF4P78317 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.86■□□□□ 0.29
RNF4P78317 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.86■□□□□ 0.29
RNF4P78317 AC004263.2-201ENST00000617183 678 ntBASIC16.86■□□□□ 0.29
RNF4P78317 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.86■□□□□ 0.29
RNF4P78317 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.86■□□□□ 0.29
RNF4P78317 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
RNF4P78317 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.86■□□□□ 0.29
RNF4P78317 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.86■□□□□ 0.29
RNF4P78317 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 AC016734.2-201ENST00000624325 1377 ntBASIC16.86■□□□□ 0.29
RNF4P78317 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
RNF4P78317 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
RNF4P78317 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RNF4P78317 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.85■□□□□ 0.29
RNF4P78317 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
RNF4P78317 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.85■□□□□ 0.29
RNF4P78317 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.85■□□□□ 0.29
RNF4P78317 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
RNF4P78317 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
RNF4P78317 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 TSSC2-201ENST00000450217 709 ntBASIC16.85■□□□□ 0.29
RNF4P78317 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.85■□□□□ 0.29
RNF4P78317 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.85■□□□□ 0.29
RNF4P78317 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.85■□□□□ 0.29
RNF4P78317 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.85■□□□□ 0.29
RNF4P78317 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.85■□□□□ 0.29
RNF4P78317 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 AL353692.3-201ENST00000407031 1396 ntBASIC16.85■□□□□ 0.29
RNF4P78317 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
RNF4P78317 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
RNF4P78317 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.85■□□□□ 0.29
RNF4P78317 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RNF4P78317 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms