Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.33■□□□□ 0.2
CLRN1P58418 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 LIN28AP1-201ENST00000429574 405 ntBASIC16.33■□□□□ 0.2
CLRN1P58418 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.33■□□□□ 0.2
CLRN1P58418 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.33■□□□□ 0.2
CLRN1P58418 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.33■□□□□ 0.2
CLRN1P58418 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.33■□□□□ 0.2
CLRN1P58418 AC024243.1-201ENST00000609234 778 ntBASIC16.33■□□□□ 0.2
CLRN1P58418 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.33■□□□□ 0.2
CLRN1P58418 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CLRN1P58418 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.33■□□□□ 0.2
CLRN1P58418 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.33■□□□□ 0.2
CLRN1P58418 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CLRN1P58418 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.33■□□□□ 0.2
CLRN1P58418 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CLRN1P58418 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.33■□□□□ 0.2
CLRN1P58418 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 ESPNP-201ENST00000270691 2015 ntBASIC16.33■□□□□ 0.2
CLRN1P58418 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CLRN1P58418 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CLRN1P58418 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.33■□□□□ 0.2
CLRN1P58418 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLRN1P58418 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CLRN1P58418 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.32■□□□□ 0.2
CLRN1P58418 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CLRN1P58418 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
CLRN1P58418 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.32■□□□□ 0.2
CLRN1P58418 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CLRN1P58418 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CLRN1P58418 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CLRN1P58418 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.32■□□□□ 0.2
CLRN1P58418 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.32■□□□□ 0.2
CLRN1P58418 ATP5G1P1-201ENST00000448724 379 ntBASIC16.32■□□□□ 0.2
CLRN1P58418 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CLRN1P58418 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CLRN1P58418 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.32■□□□□ 0.2
CLRN1P58418 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.32■□□□□ 0.2
CLRN1P58418 NEK4P2-201ENST00000580004 1012 ntBASIC16.32■□□□□ 0.2
CLRN1P58418 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.32■□□□□ 0.2
CLRN1P58418 MIR3180-4-201ENST00000582223 153 ntBASIC16.32■□□□□ 0.2
CLRN1P58418 AC010240.3-201ENST00000607688 395 ntBASIC16.32■□□□□ 0.2
CLRN1P58418 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 AC073912.3-201ENST00000624414 853 ntBASIC16.32■□□□□ 0.2
CLRN1P58418 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.32■□□□□ 0.2
CLRN1P58418 AC133561.5-201ENST00000635547 218 ntBASIC16.32■□□□□ 0.2
CLRN1P58418 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.32■□□□□ 0.2
CLRN1P58418 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CLRN1P58418 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.32■□□□□ 0.2
CLRN1P58418 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
CLRN1P58418 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLRN1P58418 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CLRN1P58418 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.31■□□□□ 0.2
CLRN1P58418 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 SDHAP2-201ENST00000455183 2001 ntBASIC16.31■□□□□ 0.2
CLRN1P58418 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 AC093677.2-201ENST00000600169 1863 ntBASIC16.31■□□□□ 0.2
CLRN1P58418 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.31■□□□□ 0.2
CLRN1P58418 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.31■□□□□ 0.2
CLRN1P58418 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.31■□□□□ 0.2
CLRN1P58418 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.31■□□□□ 0.2
CLRN1P58418 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.31■□□□□ 0.2
CLRN1P58418 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLRN1P58418 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.31■□□□□ 0.2
CLRN1P58418 ECEL1P3-201ENST00000427961 737 ntBASIC16.31■□□□□ 0.2
CLRN1P58418 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms