Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CR1P49238 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CX3CR1P49238 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.07■□□□□ 0.16
CX3CR1P49238 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CX3CR1P49238 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
CX3CR1P49238 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
CX3CR1P49238 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
CX3CR1P49238 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.06■□□□□ 0.16
CX3CR1P49238 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CX3CR1P49238 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.06■□□□□ 0.16
CX3CR1P49238 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.06■□□□□ 0.16
CX3CR1P49238 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.06■□□□□ 0.16
CX3CR1P49238 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CX3CR1P49238 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.06■□□□□ 0.16
CX3CR1P49238 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CX3CR1P49238 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CX3CR1P49238 AC092338.2-201ENST00000568827 1415 ntBASIC16.06■□□□□ 0.16
CX3CR1P49238 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CX3CR1P49238 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
CX3CR1P49238 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.06■□□□□ 0.16
CX3CR1P49238 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.06■□□□□ 0.16
CX3CR1P49238 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.06■□□□□ 0.16
CX3CR1P49238 AL355075.4-201ENST00000554988 638 ntBASIC16.06■□□□□ 0.16
CX3CR1P49238 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.06■□□□□ 0.16
CX3CR1P49238 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
CX3CR1P49238 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CX3CR1P49238 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 AL163051.1-201ENST00000569214 1512 ntBASIC16.05■□□□□ 0.16
CX3CR1P49238 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 AC009102.3-201ENST00000623118 1491 ntBASIC16.05■□□□□ 0.16
CX3CR1P49238 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
CX3CR1P49238 HOXB1-202ENST00000577092 1414 ntBASIC16.05■□□□□ 0.16
CX3CR1P49238 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
CX3CR1P49238 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 MIR149-201ENST00000384879 89 ntBASIC16.05■□□□□ 0.16
CX3CR1P49238 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
CX3CR1P49238 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.05■□□□□ 0.16
CX3CR1P49238 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.05■□□□□ 0.16
CX3CR1P49238 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.05■□□□□ 0.16
CX3CR1P49238 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
CX3CR1P49238 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.05■□□□□ 0.16
CX3CR1P49238 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CX3CR1P49238 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.05■□□□□ 0.16
CX3CR1P49238 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CR1P49238 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CX3CR1P49238 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CR1P49238 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CR1P49238 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CX3CR1P49238 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.04■□□□□ 0.16
CX3CR1P49238 KRT8P7-201ENST00000533003 1432 ntBASIC16.04■□□□□ 0.16
CX3CR1P49238 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CR1P49238 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.04■□□□□ 0.16
CX3CR1P49238 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CR1P49238 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CX3CR1P49238 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.04■□□□□ 0.16
CX3CR1P49238 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.04■□□□□ 0.16
CX3CR1P49238 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CR1P49238 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CR1P49238 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CX3CR1P49238 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CX3CR1P49238 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CR1P49238 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CR1P49238 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
CX3CR1P49238 WWOX-216ENST00000569818 525 ntBASIC16.04■□□□□ 0.16
CX3CR1P49238 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CR1P49238 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.04■□□□□ 0.16
CX3CR1P49238 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.04■□□□□ 0.16
CX3CR1P49238 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CR1P49238 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CX3CR1P49238 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CR1P49238 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CX3CR1P49238 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CX3CR1P49238 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms