Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC30.43■■■□□ 2.46
CUX1P39880 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC30.43■■■□□ 2.46
CUX1P39880 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC30.43■■■□□ 2.46
CUX1P39880 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC30.43■■■□□ 2.46
CUX1P39880 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC30.43■■■□□ 2.46
CUX1P39880 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC30.43■■■□□ 2.46
CUX1P39880 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CUX1P39880 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC30.43■■■□□ 2.46
CUX1P39880 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
CUX1P39880 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC30.43■■■□□ 2.46
CUX1P39880 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC30.43■■■□□ 2.46
CUX1P39880 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
CUX1P39880 USP39-202ENST00000409025 1946 ntTSL 5 BASIC30.43■■■□□ 2.46
CUX1P39880 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CUX1P39880 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC30.43■■■□□ 2.46
CUX1P39880 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC30.43■■■□□ 2.46
CUX1P39880 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
CUX1P39880 BEX3-201ENST00000361298 921 ntTSL 2 BASIC30.42■■■□□ 2.46
CUX1P39880 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC30.42■■■□□ 2.46
CUX1P39880 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC30.42■■■□□ 2.46
CUX1P39880 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC30.42■■■□□ 2.46
CUX1P39880 SIGLEC16-201ENST00000599858 1437 ntBASIC30.42■■■□□ 2.46
CUX1P39880 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC30.42■■■□□ 2.46
CUX1P39880 AC010460.3-201ENST00000511359 1579 ntBASIC30.42■■■□□ 2.46
CUX1P39880 PCDHAC2-203ENST00000615316 3011 ntBASIC30.42■■■□□ 2.46
CUX1P39880 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC30.42■■■□□ 2.46
CUX1P39880 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC30.42■■■□□ 2.46
CUX1P39880 KRT8P47-201ENST00000604727 1398 ntBASIC30.42■■■□□ 2.46
CUX1P39880 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC30.42■■■□□ 2.46
CUX1P39880 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CUX1P39880 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC30.42■■■□□ 2.46
CUX1P39880 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC30.42■■■□□ 2.46
CUX1P39880 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC30.42■■■□□ 2.46
CUX1P39880 LINC02084-201ENST00000606069 1096 ntBASIC30.42■■■□□ 2.46
CUX1P39880 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC30.42■■■□□ 2.46
CUX1P39880 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CUX1P39880 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC30.41■■■□□ 2.46
CUX1P39880 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC30.41■■■□□ 2.46
CUX1P39880 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CUX1P39880 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC30.41■■■□□ 2.46
CUX1P39880 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
CUX1P39880 AC108751.1-201ENST00000490852 363 ntBASIC30.41■■■□□ 2.46
CUX1P39880 YBX1P5-201ENST00000509441 847 ntBASIC30.41■■■□□ 2.46
CUX1P39880 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC30.41■■■□□ 2.46
CUX1P39880 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
CUX1P39880 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CUX1P39880 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC30.41■■■□□ 2.46
CUX1P39880 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC30.4■■■□□ 2.46
CUX1P39880 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC30.4■■■□□ 2.46
CUX1P39880 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC30.4■■■□□ 2.46
CUX1P39880 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC30.4■■■□□ 2.46
CUX1P39880 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
CUX1P39880 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC30.4■■■□□ 2.46
CUX1P39880 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC30.4■■■□□ 2.46
CUX1P39880 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC30.4■■■□□ 2.46
CUX1P39880 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
CUX1P39880 ELK2BP-201ENST00000415014 1224 ntBASIC30.4■■■□□ 2.46
CUX1P39880 AD001527.2-201ENST00000622994 785 ntBASIC30.4■■■□□ 2.46
CUX1P39880 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC30.4■■■□□ 2.46
CUX1P39880 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
CUX1P39880 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.46
CUX1P39880 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
CUX1P39880 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
CUX1P39880 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC30.39■■■□□ 2.46
CUX1P39880 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.46
CUX1P39880 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC30.39■■■□□ 2.46
CUX1P39880 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC30.39■■■□□ 2.46
CUX1P39880 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC30.39■■■□□ 2.46
CUX1P39880 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC30.39■■■□□ 2.46
CUX1P39880 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC30.39■■■□□ 2.46
CUX1P39880 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC30.39■■■□□ 2.46
CUX1P39880 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC30.39■■■□□ 2.46
CUX1P39880 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
CUX1P39880 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
CUX1P39880 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
CUX1P39880 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
CUX1P39880 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
CUX1P39880 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
CUX1P39880 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC30.38■■■□□ 2.45
CUX1P39880 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC30.38■■■□□ 2.45
CUX1P39880 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
CUX1P39880 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CUX1P39880 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC30.38■■■□□ 2.45
CUX1P39880 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
CUX1P39880 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC30.38■■■□□ 2.45
CUX1P39880 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC30.38■■■□□ 2.45
CUX1P39880 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
CUX1P39880 CLDN5-201ENST00000403084 2357 ntBASIC30.38■■■□□ 2.45
CUX1P39880 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
CUX1P39880 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC30.37■■■□□ 2.45
CUX1P39880 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CUX1P39880 KRT18P2-201ENST00000447938 1258 ntBASIC30.37■■■□□ 2.45
CUX1P39880 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC30.37■■■□□ 2.45
CUX1P39880 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CUX1P39880 MSRA-206ENST00000521209 814 ntTSL 3 BASIC30.37■■■□□ 2.45
CUX1P39880 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC30.37■■■□□ 2.45
CUX1P39880 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CUX1P39880 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CUX1P39880 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CUX1P39880 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC30.37■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms