Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.45■□□□□ 0.38
MSX2P35548 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.45■□□□□ 0.38
MSX2P35548 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.45■□□□□ 0.38
MSX2P35548 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
MSX2P35548 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.45■□□□□ 0.38
MSX2P35548 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.45■□□□□ 0.38
MSX2P35548 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 HTR7P1-201ENST00000538670 1336 ntBASIC17.45■□□□□ 0.38
MSX2P35548 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSX2P35548 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.44■□□□□ 0.38
MSX2P35548 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.44■□□□□ 0.38
MSX2P35548 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
MSX2P35548 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
MSX2P35548 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.44■□□□□ 0.38
MSX2P35548 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
MSX2P35548 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.44■□□□□ 0.38
MSX2P35548 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.44■□□□□ 0.38
MSX2P35548 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.44■□□□□ 0.38
MSX2P35548 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
MSX2P35548 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.44■□□□□ 0.38
MSX2P35548 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.44■□□□□ 0.38
MSX2P35548 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 MIR5787-201ENST00000611784 55 ntBASIC17.44■□□□□ 0.38
MSX2P35548 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.44■□□□□ 0.38
MSX2P35548 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.44■□□□□ 0.38
MSX2P35548 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
MSX2P35548 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
MSX2P35548 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
MSX2P35548 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.44■□□□□ 0.38
MSX2P35548 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.44■□□□□ 0.38
MSX2P35548 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
MSX2P35548 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.44■□□□□ 0.38
MSX2P35548 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
MSX2P35548 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSX2P35548 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
MSX2P35548 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.43■□□□□ 0.38
MSX2P35548 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.43■□□□□ 0.38
MSX2P35548 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.43■□□□□ 0.38
MSX2P35548 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
MSX2P35548 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.43■□□□□ 0.38
MSX2P35548 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
MSX2P35548 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.43■□□□□ 0.38
MSX2P35548 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.43■□□□□ 0.38
MSX2P35548 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.43■□□□□ 0.38
MSX2P35548 GUSBP6-202ENST00000438529 1198 ntBASIC17.43■□□□□ 0.38
MSX2P35548 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC17.43■□□□□ 0.38
MSX2P35548 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 AC083880.1-201ENST00000608266 535 ntBASIC17.43■□□□□ 0.38
MSX2P35548 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.43■□□□□ 0.38
MSX2P35548 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.43■□□□□ 0.38
MSX2P35548 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 GMCL1P1-201ENST00000463439 1581 ntBASIC17.43■□□□□ 0.38
MSX2P35548 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.43■□□□□ 0.38
MSX2P35548 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.43■□□□□ 0.38
MSX2P35548 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.43■□□□□ 0.38
MSX2P35548 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
MSX2P35548 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.43■□□□□ 0.38
MSX2P35548 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSX2P35548 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX2P35548 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
MSX2P35548 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX2P35548 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
MSX2P35548 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
MSX2P35548 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms