Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HOXA9P31269 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.95■□□□□ 0.62
HOXA9P31269 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
HOXA9P31269 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXA9P31269 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXA9P31269 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXA9P31269 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXA9P31269 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.95■□□□□ 0.62
HOXA9P31269 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.95■□□□□ 0.62
HOXA9P31269 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.95■□□□□ 0.62
HOXA9P31269 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.95■□□□□ 0.62
HOXA9P31269 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.95■□□□□ 0.62
HOXA9P31269 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.95■□□□□ 0.62
HOXA9P31269 FAM215A-202ENST00000632077 792 ntBASIC18.95■□□□□ 0.62
HOXA9P31269 LINC00602-201ENST00000629776 2065 ntBASIC18.95■□□□□ 0.62
HOXA9P31269 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXA9P31269 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXA9P31269 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXA9P31269 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXA9P31269 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXA9P31269 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXA9P31269 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
HOXA9P31269 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXA9P31269 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXA9P31269 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
HOXA9P31269 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 AP005117.1-201ENST00000584346 1413 ntBASIC18.94■□□□□ 0.62
HOXA9P31269 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
HOXA9P31269 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.94■□□□□ 0.62
HOXA9P31269 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.94■□□□□ 0.62
HOXA9P31269 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.94■□□□□ 0.62
HOXA9P31269 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.94■□□□□ 0.62
HOXA9P31269 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.94■□□□□ 0.62
HOXA9P31269 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.94■□□□□ 0.62
HOXA9P31269 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
HOXA9P31269 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.94■□□□□ 0.62
HOXA9P31269 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.94■□□□□ 0.62
HOXA9P31269 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.94■□□□□ 0.62
HOXA9P31269 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
HOXA9P31269 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.94■□□□□ 0.62
HOXA9P31269 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
HOXA9P31269 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.94■□□□□ 0.62
HOXA9P31269 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.94■□□□□ 0.62
HOXA9P31269 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.94■□□□□ 0.62
HOXA9P31269 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
HOXA9P31269 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
HOXA9P31269 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXA9P31269 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HOXA9P31269 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXA9P31269 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.93■□□□□ 0.62
HOXA9P31269 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.93■□□□□ 0.62
HOXA9P31269 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXA9P31269 LINC01126-201ENST00000623515 1646 ntBASIC18.93■□□□□ 0.62
HOXA9P31269 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HOXA9P31269 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXA9P31269 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
HOXA9P31269 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXA9P31269 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
HOXA9P31269 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.93■□□□□ 0.62
HOXA9P31269 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.93■□□□□ 0.62
HOXA9P31269 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HOXA9P31269 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.93■□□□□ 0.62
HOXA9P31269 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.93■□□□□ 0.62
HOXA9P31269 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.93■□□□□ 0.62
HOXA9P31269 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXA9P31269 ABCD1P5-201ENST00000445663 754 ntBASIC18.93■□□□□ 0.62
HOXA9P31269 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.93■□□□□ 0.62
HOXA9P31269 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.93■□□□□ 0.62
HOXA9P31269 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.93■□□□□ 0.62
HOXA9P31269 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.93■□□□□ 0.62
HOXA9P31269 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
HOXA9P31269 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.93■□□□□ 0.62
HOXA9P31269 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXA9P31269 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.93■□□□□ 0.62
HOXA9P31269 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.93■□□□□ 0.62
HOXA9P31269 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.93■□□□□ 0.62
HOXA9P31269 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HOXA9P31269 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.93■□□□□ 0.62
HOXA9P31269 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXA9P31269 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HOXA9P31269 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.92■□□□□ 0.62
HOXA9P31269 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXA9P31269 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.92■□□□□ 0.62
HOXA9P31269 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXA9P31269 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HOXA9P31269 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXA9P31269 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms