Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.21■□□□□ 0.67
BDNFP23560 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.21■□□□□ 0.67
BDNFP23560 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
BDNFP23560 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.21■□□□□ 0.67
BDNFP23560 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
BDNFP23560 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BDNFP23560 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
BDNFP23560 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
BDNFP23560 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.21■□□□□ 0.67
BDNFP23560 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
BDNFP23560 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.2■□□□□ 0.66
BDNFP23560 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.2■□□□□ 0.66
BDNFP23560 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.2■□□□□ 0.66
BDNFP23560 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BDNFP23560 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
BDNFP23560 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
BDNFP23560 LINC00602-201ENST00000629776 2065 ntBASIC19.2■□□□□ 0.66
BDNFP23560 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BDNFP23560 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
BDNFP23560 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BDNFP23560 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BDNFP23560 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.2■□□□□ 0.66
BDNFP23560 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BDNFP23560 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
BDNFP23560 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BDNFP23560 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BDNFP23560 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
BDNFP23560 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BDNFP23560 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.2■□□□□ 0.66
BDNFP23560 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
BDNFP23560 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BDNFP23560 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.2■□□□□ 0.66
BDNFP23560 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.2■□□□□ 0.66
BDNFP23560 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BDNFP23560 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BDNFP23560 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.19■□□□□ 0.66
BDNFP23560 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BDNFP23560 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.19■□□□□ 0.66
BDNFP23560 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
BDNFP23560 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.19■□□□□ 0.66
BDNFP23560 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
BDNFP23560 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BDNFP23560 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BDNFP23560 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.19■□□□□ 0.66
BDNFP23560 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.19■□□□□ 0.66
BDNFP23560 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BDNFP23560 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
BDNFP23560 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.19■□□□□ 0.66
BDNFP23560 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.19■□□□□ 0.66
BDNFP23560 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.19■□□□□ 0.66
BDNFP23560 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.19■□□□□ 0.66
BDNFP23560 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
BDNFP23560 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
BDNFP23560 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BDNFP23560 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.19■□□□□ 0.66
BDNFP23560 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BDNFP23560 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
BDNFP23560 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BDNFP23560 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BDNFP23560 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
BDNFP23560 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
BDNFP23560 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BDNFP23560 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
BDNFP23560 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.18■□□□□ 0.66
BDNFP23560 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
BDNFP23560 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
BDNFP23560 TSPY12P-201ENST00000421279 868 ntBASIC19.18■□□□□ 0.66
BDNFP23560 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.18■□□□□ 0.66
BDNFP23560 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.18■□□□□ 0.66
BDNFP23560 KRT126P-201ENST00000549467 1181 ntBASIC19.18■□□□□ 0.66
BDNFP23560 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.18■□□□□ 0.66
BDNFP23560 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.18■□□□□ 0.66
BDNFP23560 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
BDNFP23560 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.18■□□□□ 0.66
BDNFP23560 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.18■□□□□ 0.66
BDNFP23560 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BDNFP23560 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
BDNFP23560 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.18■□□□□ 0.66
BDNFP23560 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.18■□□□□ 0.66
BDNFP23560 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
BDNFP23560 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BDNFP23560 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
BDNFP23560 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
BDNFP23560 AC233702.3-201ENST00000578656 1387 ntBASIC19.18■□□□□ 0.66
BDNFP23560 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
BDNFP23560 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
BDNFP23560 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BDNFP23560 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.17■□□□□ 0.66
BDNFP23560 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
BDNFP23560 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BDNFP23560 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
BDNFP23560 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.17■□□□□ 0.66
BDNFP23560 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
BDNFP23560 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BDNFP23560 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
BDNFP23560 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
BDNFP23560 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.17■□□□□ 0.66
BDNFP23560 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.17■□□□□ 0.66
BDNFP23560 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.17■□□□□ 0.66
BDNFP23560 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms