Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.76■□□□□ 0.43
HOXC4P09017 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HOXC4P09017 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HOXC4P09017 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HOXC4P09017 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HOXC4P09017 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HOXC4P09017 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
HOXC4P09017 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.75■□□□□ 0.43
HOXC4P09017 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HOXC4P09017 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
HOXC4P09017 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
HOXC4P09017 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.75■□□□□ 0.43
HOXC4P09017 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HOXC4P09017 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
HOXC4P09017 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
HOXC4P09017 AL138781.2-201ENST00000617896 1843 ntBASIC17.75■□□□□ 0.43
HOXC4P09017 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.74■□□□□ 0.43
HOXC4P09017 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
HOXC4P09017 AC097374.2-201ENST00000618617 1306 ntBASIC17.74■□□□□ 0.43
HOXC4P09017 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC17.74■□□□□ 0.43
HOXC4P09017 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
HOXC4P09017 PHGDH-209ENST00000641074 1780 ntBASIC17.74■□□□□ 0.43
HOXC4P09017 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.74■□□□□ 0.43
HOXC4P09017 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.74■□□□□ 0.43
HOXC4P09017 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
HOXC4P09017 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.74■□□□□ 0.43
HOXC4P09017 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.74■□□□□ 0.43
HOXC4P09017 EMBP1-201ENST00000458200 901 ntBASIC17.74■□□□□ 0.43
HOXC4P09017 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
HOXC4P09017 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.74■□□□□ 0.43
HOXC4P09017 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.74■□□□□ 0.43
HOXC4P09017 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.74■□□□□ 0.43
HOXC4P09017 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.74■□□□□ 0.43
HOXC4P09017 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.74■□□□□ 0.43
HOXC4P09017 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 AL591684.3-201ENST00000605187 298 ntBASIC17.74■□□□□ 0.43
HOXC4P09017 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.74■□□□□ 0.43
HOXC4P09017 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
HOXC4P09017 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.74■□□□□ 0.43
HOXC4P09017 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 TP73-AS1-210ENST00000637775 1455 ntBASIC17.74■□□□□ 0.43
HOXC4P09017 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HOXC4P09017 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.74■□□□□ 0.43
HOXC4P09017 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.74■□□□□ 0.43
HOXC4P09017 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.73■□□□□ 0.43
HOXC4P09017 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC4P09017 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
HOXC4P09017 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC4P09017 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.73■□□□□ 0.43
HOXC4P09017 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC4P09017 NUS1P2-201ENST00000417358 873 ntBASIC17.73■□□□□ 0.43
HOXC4P09017 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.73■□□□□ 0.43
HOXC4P09017 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC4P09017 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.73■□□□□ 0.43
HOXC4P09017 AC011467.2-201ENST00000598425 242 ntBASIC17.73■□□□□ 0.43
HOXC4P09017 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC4P09017 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.73■□□□□ 0.43
HOXC4P09017 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC4P09017 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC4P09017 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC4P09017 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC4P09017 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC4P09017 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HOXC4P09017 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.72■□□□□ 0.43
HOXC4P09017 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.72■□□□□ 0.43
HOXC4P09017 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.72■□□□□ 0.43
HOXC4P09017 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.72■□□□□ 0.43
HOXC4P09017 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.72■□□□□ 0.43
HOXC4P09017 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.72■□□□□ 0.43
HOXC4P09017 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.72■□□□□ 0.43
HOXC4P09017 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HOXC4P09017 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
HOXC4P09017 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.72■□□□□ 0.43
HOXC4P09017 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.72■□□□□ 0.43
HOXC4P09017 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.72■□□□□ 0.43
HOXC4P09017 AC096582.2-201ENST00000510860 516 ntBASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms