Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.99■□□□□ 0.47
SNX3O60493 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.99■□□□□ 0.47
SNX3O60493 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SNX3O60493 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SNX3O60493 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC17.99■□□□□ 0.47
SNX3O60493 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNX3O60493 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNX3O60493 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNX3O60493 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNX3O60493 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNX3O60493 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SNX3O60493 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNX3O60493 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
SNX3O60493 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.99■□□□□ 0.47
SNX3O60493 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
SNX3O60493 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SNX3O60493 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.99■□□□□ 0.47
SNX3O60493 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.99■□□□□ 0.47
SNX3O60493 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.99■□□□□ 0.47
SNX3O60493 AC133963.1-201ENST00000504166 1679 ntBASIC17.99■□□□□ 0.47
SNX3O60493 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SNX3O60493 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNX3O60493 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SNX3O60493 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SNX3O60493 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SNX3O60493 PCDHA14-201ENST00000506751 2298 ntBASIC17.98■□□□□ 0.47
SNX3O60493 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SNX3O60493 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.98■□□□□ 0.47
SNX3O60493 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.98■□□□□ 0.47
SNX3O60493 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.98■□□□□ 0.47
SNX3O60493 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
SNX3O60493 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SNX3O60493 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.98■□□□□ 0.47
SNX3O60493 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SNX3O60493 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SNX3O60493 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SNX3O60493 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SNX3O60493 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SNX3O60493 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SNX3O60493 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SNX3O60493 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.98■□□□□ 0.47
SNX3O60493 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.98■□□□□ 0.47
SNX3O60493 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.98■□□□□ 0.47
SNX3O60493 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.98■□□□□ 0.47
SNX3O60493 AC133552.2-202ENST00000575694 574 ntBASIC17.98■□□□□ 0.47
SNX3O60493 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SNX3O60493 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.98■□□□□ 0.47
SNX3O60493 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.98■□□□□ 0.47
SNX3O60493 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SNX3O60493 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.98■□□□□ 0.47
SNX3O60493 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.98■□□□□ 0.47
SNX3O60493 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
SNX3O60493 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SNX3O60493 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SNX3O60493 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SNX3O60493 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SNX3O60493 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
SNX3O60493 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SNX3O60493 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.97■□□□□ 0.47
SNX3O60493 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
SNX3O60493 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SNX3O60493 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.97■□□□□ 0.47
SNX3O60493 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SNX3O60493 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SNX3O60493 DOC2GP-204ENST00000639052 2548 ntBASIC17.97■□□□□ 0.47
SNX3O60493 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.97■□□□□ 0.47
SNX3O60493 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.97■□□□□ 0.47
SNX3O60493 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SNX3O60493 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
SNX3O60493 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.97■□□□□ 0.47
SNX3O60493 BX276092.2-201ENST00000417668 665 ntBASIC17.97■□□□□ 0.47
SNX3O60493 AC006015.1-201ENST00000429970 570 ntBASIC17.97■□□□□ 0.47
SNX3O60493 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SNX3O60493 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.97■□□□□ 0.47
SNX3O60493 C1QL1P1-201ENST00000568105 661 ntBASIC17.97■□□□□ 0.47
SNX3O60493 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.97■□□□□ 0.47
SNX3O60493 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SNX3O60493 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SNX3O60493 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SNX3O60493 AC093010.1-201ENST00000473625 1624 ntBASIC17.97■□□□□ 0.47
SNX3O60493 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
SNX3O60493 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
SNX3O60493 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.97■□□□□ 0.47
SNX3O60493 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SNX3O60493 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SNX3O60493 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.97■□□□□ 0.47
SNX3O60493 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
SNX3O60493 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SNX3O60493 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SNX3O60493 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.96■□□□□ 0.47
SNX3O60493 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SNX3O60493 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
SNX3O60493 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SNX3O60493 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SNX3O60493 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SNX3O60493 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SNX3O60493 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SNX3O60493 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
SNX3O60493 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SNX3O60493 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms