Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
LDB2O43679 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.25■□□□□ 0.51
LDB2O43679 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 TSPY5P-201ENST00000426936 936 ntBASIC18.25■□□□□ 0.51
LDB2O43679 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.25■□□□□ 0.51
LDB2O43679 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.25■□□□□ 0.51
LDB2O43679 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.25■□□□□ 0.51
LDB2O43679 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
LDB2O43679 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.25■□□□□ 0.51
LDB2O43679 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
LDB2O43679 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.25■□□□□ 0.51
LDB2O43679 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.25■□□□□ 0.51
LDB2O43679 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 NOC2LP2-201ENST00000407594 1944 ntBASIC18.25■□□□□ 0.51
LDB2O43679 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.25■□□□□ 0.51
LDB2O43679 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
LDB2O43679 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
LDB2O43679 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDB2O43679 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.24■□□□□ 0.51
LDB2O43679 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LDB2O43679 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LDB2O43679 FLJ13224-201ENST00000313737 1514 ntBASIC18.24■□□□□ 0.51
LDB2O43679 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.24■□□□□ 0.51
LDB2O43679 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDB2O43679 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LDB2O43679 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDB2O43679 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDB2O43679 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LDB2O43679 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDB2O43679 RNF152P1-201ENST00000397754 604 ntBASIC18.24■□□□□ 0.51
LDB2O43679 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDB2O43679 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.24■□□□□ 0.51
LDB2O43679 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.24■□□□□ 0.51
LDB2O43679 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.24■□□□□ 0.51
LDB2O43679 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LDB2O43679 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDB2O43679 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.24■□□□□ 0.51
LDB2O43679 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
LDB2O43679 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.24■□□□□ 0.51
LDB2O43679 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDB2O43679 AL133373.2-201ENST00000623187 2828 ntBASIC18.24■□□□□ 0.51
LDB2O43679 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LDB2O43679 AL391807.1-203ENST00000604392 2365 ntBASIC18.24■□□□□ 0.51
LDB2O43679 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
LDB2O43679 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
LDB2O43679 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.23■□□□□ 0.51
LDB2O43679 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB2O43679 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.23■□□□□ 0.51
LDB2O43679 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.23■□□□□ 0.51
LDB2O43679 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
LDB2O43679 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
LDB2O43679 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB2O43679 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB2O43679 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB2O43679 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB2O43679 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
LDB2O43679 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB2O43679 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LDB2O43679 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB2O43679 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LDB2O43679 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDB2O43679 AK4P3-201ENST00000418260 669 ntBASIC18.23■□□□□ 0.51
LDB2O43679 KRT18P38-201ENST00000449496 1282 ntBASIC18.23■□□□□ 0.51
LDB2O43679 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.23■□□□□ 0.51
LDB2O43679 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.23■□□□□ 0.51
LDB2O43679 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.23■□□□□ 0.51
LDB2O43679 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LDB2O43679 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LDB2O43679 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LDB2O43679 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
LDB2O43679 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
LDB2O43679 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.23■□□□□ 0.51
LDB2O43679 AP000997.3-201ENST00000623333 2250 ntBASIC18.23■□□□□ 0.51
LDB2O43679 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
LDB2O43679 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
LDB2O43679 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDB2O43679 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB2O43679 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.22■□□□□ 0.51
LDB2O43679 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.22■□□□□ 0.51
LDB2O43679 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB2O43679 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
LDB2O43679 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB2O43679 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDB2O43679 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
LDB2O43679 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms