Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC24.84■■□□□ 1.57
MSH5O43196 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
MSH5O43196 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
MSH5O43196 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC24.84■■□□□ 1.57
MSH5O43196 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
MSH5O43196 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
MSH5O43196 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC24.84■■□□□ 1.57
MSH5O43196 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
MSH5O43196 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
MSH5O43196 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC24.83■■□□□ 1.57
MSH5O43196 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
MSH5O43196 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
MSH5O43196 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
MSH5O43196 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
MSH5O43196 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
MSH5O43196 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC24.83■■□□□ 1.57
MSH5O43196 BCAS2P3-201ENST00000416374 767 ntBASIC24.83■■□□□ 1.57
MSH5O43196 DERL1-203ENST00000419562 918 ntTSL 2 BASIC24.83■■□□□ 1.57
MSH5O43196 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
MSH5O43196 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC24.83■■□□□ 1.57
MSH5O43196 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC24.83■■□□□ 1.57
MSH5O43196 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC24.83■■□□□ 1.57
MSH5O43196 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC24.83■■□□□ 1.57
MSH5O43196 ZNF444P1-201ENST00000559497 298 ntBASIC24.83■■□□□ 1.57
MSH5O43196 AC105430.1-202ENST00000567477 483 ntTSL 3 BASIC24.83■■□□□ 1.57
MSH5O43196 ZNF585A-205ENST00000588354 596 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
MSH5O43196 BCL10-202ENST00000620248 774 ntTSL 5 BASIC24.83■■□□□ 1.57
MSH5O43196 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC24.83■■□□□ 1.57
MSH5O43196 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
MSH5O43196 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC24.83■■□□□ 1.57
MSH5O43196 KRT16P6-202ENST00000425692 1426 ntBASIC24.83■■□□□ 1.57
MSH5O43196 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
MSH5O43196 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
MSH5O43196 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
MSH5O43196 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
MSH5O43196 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC24.83■■□□□ 1.56
MSH5O43196 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
MSH5O43196 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC24.83■■□□□ 1.56
MSH5O43196 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
MSH5O43196 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH5O43196 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH5O43196 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH5O43196 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH5O43196 Telomerase-vert.1-201ENST00000363312 438 ntBASIC24.82■■□□□ 1.56
MSH5O43196 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH5O43196 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
MSH5O43196 MTATP6P31-201ENST00000406985 692 ntBASIC24.82■■□□□ 1.56
MSH5O43196 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
MSH5O43196 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH5O43196 AP000347.1-202ENST00000435868 847 ntBASIC24.82■■□□□ 1.56
MSH5O43196 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC24.82■■□□□ 1.56
MSH5O43196 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC24.82■■□□□ 1.56
MSH5O43196 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC24.82■■□□□ 1.56
MSH5O43196 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC24.82■■□□□ 1.56
MSH5O43196 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC24.82■■□□□ 1.56
MSH5O43196 WT1-AS-206ENST00000525436 1254 ntTSL 5 BASIC24.82■■□□□ 1.56
MSH5O43196 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
MSH5O43196 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC24.82■■□□□ 1.56
MSH5O43196 MIR4760-201ENST00000585040 80 ntBASIC24.82■■□□□ 1.56
MSH5O43196 VN1R87P-201ENST00000596706 487 ntBASIC24.82■■□□□ 1.56
MSH5O43196 AC018754.1-201ENST00000607486 925 ntBASIC24.82■■□□□ 1.56
MSH5O43196 AC092119.3-201ENST00000612618 583 ntBASIC24.82■■□□□ 1.56
MSH5O43196 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH5O43196 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH5O43196 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC24.82■■□□□ 1.56
MSH5O43196 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH5O43196 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH5O43196 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH5O43196 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
MSH5O43196 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH5O43196 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
MSH5O43196 LINC00469-201ENST00000321800 708 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
MSH5O43196 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
MSH5O43196 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
MSH5O43196 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC24.81■■□□□ 1.56
MSH5O43196 AC069213.1-202ENST00000417011 810 ntTSL 2 BASIC24.81■■□□□ 1.56
MSH5O43196 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC24.81■■□□□ 1.56
MSH5O43196 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC24.81■■□□□ 1.56
MSH5O43196 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC24.81■■□□□ 1.56
MSH5O43196 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
MSH5O43196 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC24.81■■□□□ 1.56
MSH5O43196 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC24.81■■□□□ 1.56
MSH5O43196 PRELID1P1-202ENST00000567272 903 ntBASIC24.81■■□□□ 1.56
MSH5O43196 AC126365.2-201ENST00000580630 379 ntBASIC24.81■■□□□ 1.56
MSH5O43196 RN7SL510P-201ENST00000581311 263 ntBASIC24.81■■□□□ 1.56
MSH5O43196 DFFB-212ENST00000625756 649 ntTSL 5 BASIC24.81■■□□□ 1.56
MSH5O43196 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH5O43196 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH5O43196 DPP3P2-201ENST00000416030 1696 ntBASIC24.81■■□□□ 1.56
MSH5O43196 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
MSH5O43196 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH5O43196 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
MSH5O43196 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
MSH5O43196 CASC19-229ENST00000641418 1373 ntBASIC24.8■■□□□ 1.56
MSH5O43196 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH5O43196 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC24.8■■□□□ 1.56
MSH5O43196 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
MSH5O43196 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH5O43196 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH5O43196 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms