Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MSH4O15457 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.45■□□□□ 0.86
MSH4O15457 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH4O15457 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH4O15457 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
MSH4O15457 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.45■□□□□ 0.86
MSH4O15457 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MSH4O15457 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.45■□□□□ 0.86
MSH4O15457 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH4O15457 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.45■□□□□ 0.86
MSH4O15457 TPSP2-201ENST00000561760 610 ntBASIC20.45■□□□□ 0.86
MSH4O15457 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.45■□□□□ 0.86
MSH4O15457 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
MSH4O15457 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
MSH4O15457 AC124864.1-201ENST00000623408 392 ntBASIC20.45■□□□□ 0.86
MSH4O15457 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.45■□□□□ 0.86
MSH4O15457 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MSH4O15457 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
MSH4O15457 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH4O15457 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH4O15457 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
MSH4O15457 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.45■□□□□ 0.86
MSH4O15457 AL096828.2-201ENST00000567259 1965 ntBASIC20.45■□□□□ 0.86
MSH4O15457 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH4O15457 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH4O15457 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH4O15457 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
MSH4O15457 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH4O15457 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH4O15457 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSH4O15457 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH4O15457 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.44■□□□□ 0.86
MSH4O15457 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH4O15457 DDT-203ENST00000403754 569 ntTSL 3 BASIC20.44■□□□□ 0.86
MSH4O15457 TSPY12P-201ENST00000421279 868 ntBASIC20.44■□□□□ 0.86
MSH4O15457 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH4O15457 HCG4P8-203ENST00000443049 980 ntBASIC20.44■□□□□ 0.86
MSH4O15457 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH4O15457 GUSBP12-201ENST00000513727 720 ntBASIC20.44■□□□□ 0.86
MSH4O15457 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH4O15457 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.44■□□□□ 0.86
MSH4O15457 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
MSH4O15457 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSH4O15457 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.44■□□□□ 0.86
MSH4O15457 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH4O15457 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH4O15457 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH4O15457 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH4O15457 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
MSH4O15457 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.44■□□□□ 0.86
MSH4O15457 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.44■□□□□ 0.86
MSH4O15457 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
MSH4O15457 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
MSH4O15457 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.43■□□□□ 0.86
MSH4O15457 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.43■□□□□ 0.86
MSH4O15457 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.43■□□□□ 0.86
MSH4O15457 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
MSH4O15457 AL845331.1-201ENST00000424978 1190 ntBASIC20.43■□□□□ 0.86
MSH4O15457 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.43■□□□□ 0.86
MSH4O15457 DRAXINP1-201ENST00000437611 948 ntBASIC20.43■□□□□ 0.86
MSH4O15457 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.43■□□□□ 0.86
MSH4O15457 AC092329.2-201ENST00000598402 547 ntBASIC20.43■□□□□ 0.86
MSH4O15457 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.43■□□□□ 0.86
MSH4O15457 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
MSH4O15457 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
MSH4O15457 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
MSH4O15457 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.42■□□□□ 0.86
MSH4O15457 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.42■□□□□ 0.86
MSH4O15457 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
MSH4O15457 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.42■□□□□ 0.86
MSH4O15457 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.42■□□□□ 0.86
MSH4O15457 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH4O15457 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms