Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.6■□□□□ 0.41
SLC28A1O00337 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.6■□□□□ 0.41
SLC28A1O00337 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.6■□□□□ 0.41
SLC28A1O00337 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC28A1O00337 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
SLC28A1O00337 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SLC28A1O00337 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SLC28A1O00337 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC28A1O00337 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.6■□□□□ 0.41
SLC28A1O00337 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SLC28A1O00337 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC28A1O00337 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC28A1O00337 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC28A1O00337 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SLC28A1O00337 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SLC28A1O00337 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC28A1O00337 AP000997.3-201ENST00000623333 2250 ntBASIC17.59■□□□□ 0.41
SLC28A1O00337 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.59■□□□□ 0.41
SLC28A1O00337 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC28A1O00337 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SLC28A1O00337 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC28A1O00337 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.59■□□□□ 0.41
SLC28A1O00337 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SLC28A1O00337 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.59■□□□□ 0.41
SLC28A1O00337 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SLC28A1O00337 AC092338.2-201ENST00000568827 1415 ntBASIC17.59■□□□□ 0.41
SLC28A1O00337 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC28A1O00337 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
SLC28A1O00337 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC28A1O00337 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.59■□□□□ 0.41
SLC28A1O00337 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SLC28A1O00337 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.59■□□□□ 0.41
SLC28A1O00337 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SLC28A1O00337 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SLC28A1O00337 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.59■□□□□ 0.41
SLC28A1O00337 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.59■□□□□ 0.41
SLC28A1O00337 MIR3180-4-201ENST00000582223 153 ntBASIC17.59■□□□□ 0.41
SLC28A1O00337 MIR4785-201ENST00000585005 73 ntBASIC17.59■□□□□ 0.41
SLC28A1O00337 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
SLC28A1O00337 AC116562.4-202ENST00000641738 218 ntBASIC17.59■□□□□ 0.41
SLC28A1O00337 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC28A1O00337 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
SLC28A1O00337 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC28A1O00337 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC28A1O00337 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SLC28A1O00337 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SLC28A1O00337 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.58■□□□□ 0.41
SLC28A1O00337 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.58■□□□□ 0.41
SLC28A1O00337 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.58■□□□□ 0.41
SLC28A1O00337 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SLC28A1O00337 AC093010.1-201ENST00000473625 1624 ntBASIC17.58■□□□□ 0.41
SLC28A1O00337 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SLC28A1O00337 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SLC28A1O00337 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.58■□□□□ 0.41
SLC28A1O00337 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
SLC28A1O00337 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
SLC28A1O00337 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
SLC28A1O00337 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SLC28A1O00337 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SLC28A1O00337 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.58■□□□□ 0.4
SLC28A1O00337 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
SLC28A1O00337 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SLC28A1O00337 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.58■□□□□ 0.4
SLC28A1O00337 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SLC28A1O00337 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.58■□□□□ 0.4
SLC28A1O00337 AC104390.1-201ENST00000555663 520 ntBASIC17.58■□□□□ 0.4
SLC28A1O00337 FITM1-202ENST00000559294 800 ntBASIC17.58■□□□□ 0.4
SLC28A1O00337 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.58■□□□□ 0.4
SLC28A1O00337 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC28A1O00337 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.58■□□□□ 0.4
SLC28A1O00337 AC112497.1-201ENST00000624824 639 ntBASIC17.58■□□□□ 0.4
SLC28A1O00337 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC28A1O00337 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC28A1O00337 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC28A1O00337 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.58■□□□□ 0.4
SLC28A1O00337 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SLC28A1O00337 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC28A1O00337 AC099343.3-201ENST00000605834 2503 ntBASIC17.58■□□□□ 0.4
SLC28A1O00337 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.58■□□□□ 0.4
SLC28A1O00337 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SLC28A1O00337 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC28A1O00337 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.58■□□□□ 0.4
SLC28A1O00337 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SLC28A1O00337 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.58■□□□□ 0.4
SLC28A1O00337 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SLC28A1O00337 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SLC28A1O00337 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SLC28A1O00337 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SLC28A1O00337 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SLC28A1O00337 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SLC28A1O00337 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SLC28A1O00337 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SLC28A1O00337 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SLC28A1O00337 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.57■□□□□ 0.4
SLC28A1O00337 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SLC28A1O00337 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.57■□□□□ 0.4
SLC28A1O00337 AC008550.1-201ENST00000511500 884 ntBASIC17.57■□□□□ 0.4
SLC28A1O00337 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.57■□□□□ 0.4
SLC28A1O00337 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
SLC28A1O00337 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms