Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
UPK1AO00322 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
UPK1AO00322 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
UPK1AO00322 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPK1AO00322 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.31■□□□□ 0.36
UPK1AO00322 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.31■□□□□ 0.36
UPK1AO00322 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
UPK1AO00322 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
UPK1AO00322 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
UPK1AO00322 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPK1AO00322 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPK1AO00322 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPK1AO00322 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.31■□□□□ 0.36
UPK1AO00322 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPK1AO00322 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPK1AO00322 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPK1AO00322 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPK1AO00322 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPK1AO00322 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.31■□□□□ 0.36
UPK1AO00322 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.31■□□□□ 0.36
UPK1AO00322 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
UPK1AO00322 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.31■□□□□ 0.36
UPK1AO00322 FAM87A-204ENST00000613235 858 ntBASIC17.31■□□□□ 0.36
UPK1AO00322 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.31■□□□□ 0.36
UPK1AO00322 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPK1AO00322 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPK1AO00322 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
UPK1AO00322 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPK1AO00322 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
UPK1AO00322 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
UPK1AO00322 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
UPK1AO00322 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPK1AO00322 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.31■□□□□ 0.36
UPK1AO00322 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
UPK1AO00322 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.31■□□□□ 0.36
UPK1AO00322 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPK1AO00322 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
UPK1AO00322 AC108860.2-201ENST00000562760 2183 ntBASIC17.3■□□□□ 0.36
UPK1AO00322 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 HOXB1-202ENST00000577092 1414 ntBASIC17.3■□□□□ 0.36
UPK1AO00322 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.3■□□□□ 0.36
UPK1AO00322 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
UPK1AO00322 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.3■□□□□ 0.36
UPK1AO00322 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
UPK1AO00322 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
UPK1AO00322 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
UPK1AO00322 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
UPK1AO00322 ECEL1P2-202ENST00000465689 757 ntBASIC17.3■□□□□ 0.36
UPK1AO00322 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.3■□□□□ 0.36
UPK1AO00322 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.3■□□□□ 0.36
UPK1AO00322 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
UPK1AO00322 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
UPK1AO00322 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.3■□□□□ 0.36
UPK1AO00322 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
UPK1AO00322 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
UPK1AO00322 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.29■□□□□ 0.36
UPK1AO00322 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.29■□□□□ 0.36
UPK1AO00322 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.29■□□□□ 0.36
UPK1AO00322 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.29■□□□□ 0.36
UPK1AO00322 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.29■□□□□ 0.36
UPK1AO00322 AC087499.1-201ENST00000418141 1075 ntBASIC17.29■□□□□ 0.36
UPK1AO00322 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.29■□□□□ 0.36
UPK1AO00322 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.29■□□□□ 0.36
UPK1AO00322 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.29■□□□□ 0.36
UPK1AO00322 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.29■□□□□ 0.36
UPK1AO00322 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.29■□□□□ 0.36
UPK1AO00322 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
UPK1AO00322 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPK1AO00322 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.29■□□□□ 0.36
UPK1AO00322 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms