Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
HLA-DRB4X5D2U9 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DRB4X5D2U9 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DRB4X5D2U9 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC13.78□□□□□ -0.2
HLA-DRB4X5D2U9 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
HLA-DRB4X5D2U9 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DRB4X5D2U9 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DRB4X5D2U9 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DRB4X5D2U9 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DRB4X5D2U9 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC13.78□□□□□ -0.2
HLA-DRB4X5D2U9 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
HLA-DRB4X5D2U9 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HLA-DRB4X5D2U9 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HLA-DRB4X5D2U9 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
HLA-DRB4X5D2U9 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.2
HLA-DRB4X5D2U9 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
HLA-DRB4X5D2U9 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
HLA-DRB4X5D2U9 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
HLA-DRB4X5D2U9 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
HLA-DRB4X5D2U9 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 KRT18P22-201ENST00000402024 1347 ntBASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 HMGA1P5-201ENST00000412453 271 ntBASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 AC087499.1-201ENST00000418141 1075 ntBASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 SIRPAP1-201ENST00000448467 1770 ntBASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 CFL2-205ENST00000555765 632 ntTSL 2 BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 AL499627.1-201ENST00000569373 2188 ntBASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HLA-DRB4X5D2U9 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 MYLKP1-201ENST00000509077 1580 ntBASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 HOXB1-202ENST00000577092 1414 ntBASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 INGX-201ENST00000359239 846 ntBASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 ILF2-202ENST00000368681 726 ntTSL 2 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 GXYLT1P3-201ENST00000453058 1193 ntBASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 FAM87A-204ENST00000613235 858 ntBASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 AC073912.3-201ENST00000624414 853 ntBASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 AC126763.1-201ENST00000552015 2118 ntBASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HLA-DRB4X5D2U9 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DRB4X5D2U9 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC13.75□□□□□ -0.21
HLA-DRB4X5D2U9 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HLA-DRB4X5D2U9 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms