Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 AC084018.2-201ENST00000613093 2607 ntBASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 AC011298.2-201ENST00000617989 482 ntBASIC19.27■□□□□ 0.68
SMARCAL1Q9NZC9 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SMARCAL1Q9NZC9 AC006116.8-202ENST00000587620 1550 ntBASIC19.27■□□□□ 0.67
SMARCAL1Q9NZC9 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SMARCAL1Q9NZC9 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SMARCAL1Q9NZC9 AL109659.2-201ENST00000606809 1674 ntBASIC19.27■□□□□ 0.67
SMARCAL1Q9NZC9 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.27■□□□□ 0.67
SMARCAL1Q9NZC9 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SMARCAL1Q9NZC9 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 FAM197Y4-202ENST00000622692 608 ntBASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 GMCL1P1-201ENST00000463439 1581 ntBASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.26■□□□□ 0.67
SMARCAL1Q9NZC9 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 KRT8P50-201ENST00000562022 1438 ntBASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.25■□□□□ 0.67
SMARCAL1Q9NZC9 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.24■□□□□ 0.67
SMARCAL1Q9NZC9 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCAL1Q9NZC9 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
SMARCAL1Q9NZC9 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCAL1Q9NZC9 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCAL1Q9NZC9 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCAL1Q9NZC9 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCAL1Q9NZC9 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCAL1Q9NZC9 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.24■□□□□ 0.67
SMARCAL1Q9NZC9 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCAL1Q9NZC9 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SMARCAL1Q9NZC9 AC011506.1-201ENST00000474329 610 ntBASIC19.24■□□□□ 0.67
SMARCAL1Q9NZC9 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.24■□□□□ 0.67
SMARCAL1Q9NZC9 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms