Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 SLC25A3P1-201ENST00000443844 931 ntBASIC19.62■□□□□ 0.73
SIX2Q9NPC8 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 GCSHP2-201ENST00000560971 527 ntBASIC19.62■□□□□ 0.73
SIX2Q9NPC8 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.61■□□□□ 0.73
SIX2Q9NPC8 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX2Q9NPC8 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 AC092865.7-201ENST00000641832 219 ntBASIC19.6■□□□□ 0.73
SIX2Q9NPC8 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 AC006116.8-202ENST00000587620 1550 ntBASIC19.6■□□□□ 0.73
SIX2Q9NPC8 GNAS-203ENST00000306120 1878 ntBASIC19.6■□□□□ 0.73
SIX2Q9NPC8 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX2Q9NPC8 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 PVRIG2P-201ENST00000435460 978 ntBASIC19.59■□□□□ 0.73
SIX2Q9NPC8 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 MNT-208ENST00000575394 606 ntTSL 4 BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 LINC00896-202ENST00000609602 2128 ntBASIC19.59■□□□□ 0.73
SIX2Q9NPC8 AL023973.1-201ENST00000624619 620 ntBASIC19.59■□□□□ 0.73
SIX2Q9NPC8 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 LINC00167-201ENST00000530583 1419 ntBASIC19.59■□□□□ 0.73
SIX2Q9NPC8 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SIX2Q9NPC8 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.58■□□□□ 0.73
SIX2Q9NPC8 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms