Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SSU72Q9NP77 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SSU72Q9NP77 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.16■□□□□ 0.5
SSU72Q9NP77 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SSU72Q9NP77 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SSU72Q9NP77 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.16■□□□□ 0.5
SSU72Q9NP77 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SSU72Q9NP77 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SSU72Q9NP77 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SSU72Q9NP77 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SSU72Q9NP77 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SSU72Q9NP77 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.15■□□□□ 0.5
SSU72Q9NP77 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.15■□□□□ 0.5
SSU72Q9NP77 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.15■□□□□ 0.5
SSU72Q9NP77 AP002982.1-201ENST00000492365 877 ntBASIC18.15■□□□□ 0.5
SSU72Q9NP77 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 AC142086.2-201ENST00000569753 217 ntBASIC18.15■□□□□ 0.5
SSU72Q9NP77 AL355312.1-201ENST00000407115 2176 ntBASIC18.15■□□□□ 0.5
SSU72Q9NP77 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
SSU72Q9NP77 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 GPAT2P1-201ENST00000444924 1672 ntBASIC18.15■□□□□ 0.5
SSU72Q9NP77 BCL2-203ENST00000589955 5011 ntBASIC18.15■□□□□ 0.5
SSU72Q9NP77 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SSU72Q9NP77 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.15■□□□□ 0.5
SSU72Q9NP77 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.15■□□□□ 0.5
SSU72Q9NP77 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SSU72Q9NP77 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
SSU72Q9NP77 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SSU72Q9NP77 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SSU72Q9NP77 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
SSU72Q9NP77 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.14■□□□□ 0.49
SSU72Q9NP77 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SSU72Q9NP77 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSU72Q9NP77 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSU72Q9NP77 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSU72Q9NP77 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSU72Q9NP77 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSU72Q9NP77 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSU72Q9NP77 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SSU72Q9NP77 AL031985.4-201ENST00000642138 673 ntBASIC18.14■□□□□ 0.49
SSU72Q9NP77 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSU72Q9NP77 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSU72Q9NP77 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSU72Q9NP77 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSU72Q9NP77 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SSU72Q9NP77 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.14■□□□□ 0.49
SSU72Q9NP77 KRT16P1-201ENST00000399124 1418 ntBASIC18.14■□□□□ 0.49
SSU72Q9NP77 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SSU72Q9NP77 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SSU72Q9NP77 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSU72Q9NP77 NKILA-202ENST00000614771 2598 ntBASIC18.13■□□□□ 0.49
SSU72Q9NP77 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SSU72Q9NP77 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.13■□□□□ 0.49
SSU72Q9NP77 DUTP2-201ENST00000519164 463 ntBASIC18.13■□□□□ 0.49
SSU72Q9NP77 AC233263.1-201ENST00000578059 224 ntBASIC18.13■□□□□ 0.49
SSU72Q9NP77 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SSU72Q9NP77 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.13■□□□□ 0.49
SSU72Q9NP77 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.13■□□□□ 0.49
SSU72Q9NP77 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SSU72Q9NP77 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.13■□□□□ 0.49
SSU72Q9NP77 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
SSU72Q9NP77 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.13■□□□□ 0.49
SSU72Q9NP77 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.13■□□□□ 0.49
SSU72Q9NP77 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
SSU72Q9NP77 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.13■□□□□ 0.49
SSU72Q9NP77 AC036111.1-201ENST00000533973 1582 ntBASIC18.13■□□□□ 0.49
SSU72Q9NP77 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSU72Q9NP77 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SSU72Q9NP77 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.12■□□□□ 0.49
SSU72Q9NP77 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SSU72Q9NP77 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms