Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.68■□□□□ 0.58
TRIM56Q9BRZ2 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 TSPY7P-201ENST00000431358 1114 ntBASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 MCCD1P1-208ENST00000445732 328 ntBASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
TRIM56Q9BRZ2 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 KRT8P50-201ENST00000562022 1438 ntBASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 AP003071.4-201ENST00000562276 1284 ntBASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 MYC-208ENST00000641036 567 ntBASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 AC036111.1-201ENST00000533973 1582 ntBASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRIM56Q9BRZ2 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 AL390955.1-201ENST00000428694 934 ntBASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 AL355355.2-201ENST00000442321 338 ntBASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 KRT18P41-201ENST00000518924 1277 ntBASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
TRIM56Q9BRZ2 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms