Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NPAS1Q99742 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NPAS1Q99742 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NPAS1Q99742 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NPAS1Q99742 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NPAS1Q99742 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NPAS1Q99742 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NPAS1Q99742 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
NPAS1Q99742 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.65■□□□□ 0.26
NPAS1Q99742 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
NPAS1Q99742 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC16.65■□□□□ 0.26
NPAS1Q99742 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
NPAS1Q99742 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.65■□□□□ 0.26
NPAS1Q99742 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.65■□□□□ 0.26
NPAS1Q99742 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.65■□□□□ 0.26
NPAS1Q99742 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.65■□□□□ 0.26
NPAS1Q99742 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
NPAS1Q99742 SPDYE13P-201ENST00000445314 798 ntBASIC16.65■□□□□ 0.26
NPAS1Q99742 AC092647.4-201ENST00000457211 535 ntBASIC16.65■□□□□ 0.26
NPAS1Q99742 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.65■□□□□ 0.26
NPAS1Q99742 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.65■□□□□ 0.26
NPAS1Q99742 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.65■□□□□ 0.26
NPAS1Q99742 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
NPAS1Q99742 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.65■□□□□ 0.26
NPAS1Q99742 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.65■□□□□ 0.26
NPAS1Q99742 AC009102.3-201ENST00000623118 1491 ntBASIC16.65■□□□□ 0.26
NPAS1Q99742 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 PCDHB18P-201ENST00000524813 2368 ntBASIC16.65■□□□□ 0.26
NPAS1Q99742 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
NPAS1Q99742 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
NPAS1Q99742 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
NPAS1Q99742 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NPAS1Q99742 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.64■□□□□ 0.25
NPAS1Q99742 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.64■□□□□ 0.25
NPAS1Q99742 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
NPAS1Q99742 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 MIR149-201ENST00000384879 89 ntBASIC16.64■□□□□ 0.25
NPAS1Q99742 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.64■□□□□ 0.25
NPAS1Q99742 HOMER2P1-201ENST00000455653 964 ntBASIC16.64■□□□□ 0.25
NPAS1Q99742 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.64■□□□□ 0.25
NPAS1Q99742 KRT18P35-201ENST00000510488 1269 ntBASIC16.64■□□□□ 0.25
NPAS1Q99742 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.64■□□□□ 0.25
NPAS1Q99742 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.64■□□□□ 0.25
NPAS1Q99742 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.64■□□□□ 0.25
NPAS1Q99742 AC083849.1-201ENST00000615227 514 ntBASIC16.64■□□□□ 0.25
NPAS1Q99742 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.64■□□□□ 0.25
NPAS1Q99742 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
NPAS1Q99742 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NPAS1Q99742 LINC01126-201ENST00000623515 1646 ntBASIC16.63■□□□□ 0.25
NPAS1Q99742 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
NPAS1Q99742 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NPAS1Q99742 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.63■□□□□ 0.25
NPAS1Q99742 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NPAS1Q99742 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
NPAS1Q99742 AL391807.1-203ENST00000604392 2365 ntBASIC16.63■□□□□ 0.25
NPAS1Q99742 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.63■□□□□ 0.25
NPAS1Q99742 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NPAS1Q99742 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
NPAS1Q99742 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
NPAS1Q99742 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
NPAS1Q99742 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NPAS1Q99742 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NPAS1Q99742 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
NPAS1Q99742 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms