Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.57■□□□□ 0.56
CHFRQ96EP1 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CHFRQ96EP1 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.57■□□□□ 0.56
CHFRQ96EP1 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHFRQ96EP1 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CHFRQ96EP1 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 LINC01126-201ENST00000623515 1646 ntBASIC18.56■□□□□ 0.56
CHFRQ96EP1 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 HNRNPDP1-201ENST00000439535 754 ntBASIC18.56■□□□□ 0.56
CHFRQ96EP1 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 AL138831.2-201ENST00000606564 490 ntBASIC18.56■□□□□ 0.56
CHFRQ96EP1 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 AL355877.3-201ENST00000622820 899 ntBASIC18.56■□□□□ 0.56
CHFRQ96EP1 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.56■□□□□ 0.56
CHFRQ96EP1 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 AC112777.1-201ENST00000540175 1423 ntBASIC18.56■□□□□ 0.56
CHFRQ96EP1 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHFRQ96EP1 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CHFRQ96EP1 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.55■□□□□ 0.56
CHFRQ96EP1 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHFRQ96EP1 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHFRQ96EP1 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHFRQ96EP1 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.55■□□□□ 0.56
CHFRQ96EP1 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.55■□□□□ 0.56
CHFRQ96EP1 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHFRQ96EP1 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.55■□□□□ 0.56
CHFRQ96EP1 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CHFRQ96EP1 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
CHFRQ96EP1 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.55■□□□□ 0.56
CHFRQ96EP1 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.55■□□□□ 0.56
CHFRQ96EP1 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.55■□□□□ 0.56
CHFRQ96EP1 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
CHFRQ96EP1 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHFRQ96EP1 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.55■□□□□ 0.56
CHFRQ96EP1 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHFRQ96EP1 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.55■□□□□ 0.56
CHFRQ96EP1 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
CHFRQ96EP1 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.54■□□□□ 0.56
CHFRQ96EP1 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.54■□□□□ 0.56
CHFRQ96EP1 PMS2P1-201ENST00000431037 1228 ntBASIC18.54■□□□□ 0.56
CHFRQ96EP1 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.54■□□□□ 0.56
CHFRQ96EP1 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.54■□□□□ 0.56
CHFRQ96EP1 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.54■□□□□ 0.56
CHFRQ96EP1 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.54■□□□□ 0.56
CHFRQ96EP1 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.54■□□□□ 0.56
CHFRQ96EP1 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.54■□□□□ 0.56
CHFRQ96EP1 AC008687.5-201ENST00000593746 558 ntBASIC18.54■□□□□ 0.56
CHFRQ96EP1 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.54■□□□□ 0.56
CHFRQ96EP1 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 INTS4P1-201ENST00000438455 1935 ntBASIC18.54■□□□□ 0.56
CHFRQ96EP1 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHFRQ96EP1 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms