Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTP4A1Q93096 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTP4A1Q93096 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTP4A1Q93096 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
PTP4A1Q93096 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTP4A1Q93096 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
PTP4A1Q93096 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.44■□□□□ 0.22
PTP4A1Q93096 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTP4A1Q93096 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.44■□□□□ 0.22
PTP4A1Q93096 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC16.44■□□□□ 0.22
PTP4A1Q93096 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
PTP4A1Q93096 AC026471.5-201ENST00000615068 467 ntBASIC16.44■□□□□ 0.22
PTP4A1Q93096 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTP4A1Q93096 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.44■□□□□ 0.22
PTP4A1Q93096 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTP4A1Q93096 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.44■□□□□ 0.22
PTP4A1Q93096 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTP4A1Q93096 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
PTP4A1Q93096 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
PTP4A1Q93096 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
PTP4A1Q93096 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTP4A1Q93096 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTP4A1Q93096 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTP4A1Q93096 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTP4A1Q93096 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.44■□□□□ 0.22
PTP4A1Q93096 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.44■□□□□ 0.22
PTP4A1Q93096 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.44■□□□□ 0.22
PTP4A1Q93096 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTP4A1Q93096 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTP4A1Q93096 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTP4A1Q93096 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
PTP4A1Q93096 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.43■□□□□ 0.22
PTP4A1Q93096 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTP4A1Q93096 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
PTP4A1Q93096 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTP4A1Q93096 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTP4A1Q93096 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTP4A1Q93096 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTP4A1Q93096 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTP4A1Q93096 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTP4A1Q93096 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
PTP4A1Q93096 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.43■□□□□ 0.22
PTP4A1Q93096 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC16.43■□□□□ 0.22
PTP4A1Q93096 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.43■□□□□ 0.22
PTP4A1Q93096 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.43■□□□□ 0.22
PTP4A1Q93096 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.43■□□□□ 0.22
PTP4A1Q93096 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTP4A1Q93096 AL163051.1-201ENST00000569214 1512 ntBASIC16.43■□□□□ 0.22
PTP4A1Q93096 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.43■□□□□ 0.22
PTP4A1Q93096 KRT17P2-201ENST00000300992 1314 ntBASIC16.43■□□□□ 0.22
PTP4A1Q93096 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.43■□□□□ 0.22
PTP4A1Q93096 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
PTP4A1Q93096 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 MFAP1P1-201ENST00000442257 1255 ntBASIC16.42■□□□□ 0.22
PTP4A1Q93096 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 SLC25A1P4-201ENST00000567977 778 ntBASIC16.42■□□□□ 0.22
PTP4A1Q93096 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 MIR4785-201ENST00000585005 73 ntBASIC16.42■□□□□ 0.22
PTP4A1Q93096 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.42■□□□□ 0.22
PTP4A1Q93096 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTP4A1Q93096 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms