Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HMGB4Q8WW32 AC083906.6-201ENST00000641366 219 ntBASIC18.31■□□□□ 0.52
HMGB4Q8WW32 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB4Q8WW32 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB4Q8WW32 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGB4Q8WW32 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB4Q8WW32 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB4Q8WW32 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB4Q8WW32 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB4Q8WW32 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGB4Q8WW32 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 RCN1P2-201ENST00000398357 915 ntBASIC18.3■□□□□ 0.52
HMGB4Q8WW32 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 PMS2P1-201ENST00000431037 1228 ntBASIC18.3■□□□□ 0.52
HMGB4Q8WW32 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGB4Q8WW32 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 AC093909.1-201ENST00000504731 1122 ntBASIC18.29■□□□□ 0.52
HMGB4Q8WW32 SLC25A1P1-201ENST00000528351 927 ntBASIC18.29■□□□□ 0.52
HMGB4Q8WW32 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 AC005336.2-201ENST00000593183 939 ntBASIC18.29■□□□□ 0.52
HMGB4Q8WW32 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGB4Q8WW32 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 TP73-AS1-210ENST00000637775 1455 ntBASIC18.28■□□□□ 0.52
HMGB4Q8WW32 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 MIR574-201ENST00000385209 96 ntBASIC18.28■□□□□ 0.52
HMGB4Q8WW32 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
HMGB4Q8WW32 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB4Q8WW32 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms