Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 CYP2T1P-202ENST00000641596 2535 ntBASIC11.42□□□□□ -0.58
LINC00643Q86TS7 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 DBET-201ENST00000630918 3363 ntBASIC11.42□□□□□ -0.58
LINC00643Q86TS7 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 RPS2-202ENST00000526522 924 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
LINC00643Q86TS7 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 HLA-DQB1-201ENST00000374943 1656 ntBASIC11.4□□□□□ -0.58
LINC00643Q86TS7 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 POLL-206ENST00000370172 2308 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 MNT-208ENST00000575394 606 ntTSL 4 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
LINC00643Q86TS7 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms