Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC092183.1-201ENST00000469884 875 ntBASIC19.56■□□□□ 0.72
VCPP55072 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.56■□□□□ 0.72
VCPP55072 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
VCPP55072 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VCPP55072 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.56■□□□□ 0.72
VCPP55072 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCPP55072 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCPP55072 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCPP55072 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.56■□□□□ 0.72
VCPP55072 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCPP55072 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VCPP55072 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
VCPP55072 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
VCPP55072 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCPP55072 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCPP55072 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VCPP55072 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCPP55072 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VCPP55072 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VCPP55072 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VCPP55072 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCPP55072 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.55■□□□□ 0.72
VCPP55072 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
VCPP55072 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
VCPP55072 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
VCPP55072 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCPP55072 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.55■□□□□ 0.72
VCPP55072 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.55■□□□□ 0.72
VCPP55072 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VCPP55072 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
VCPP55072 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.55■□□□□ 0.72
VCPP55072 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.55■□□□□ 0.72
VCPP55072 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.55■□□□□ 0.72
VCPP55072 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.55■□□□□ 0.72
VCPP55072 AC091304.2-201ENST00000564639 760 ntBASIC19.55■□□□□ 0.72
VCPP55072 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
VCPP55072 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VCPP55072 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC19.55■□□□□ 0.72
VCPP55072 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.55■□□□□ 0.72
VCPP55072 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VCPP55072 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.55■□□□□ 0.72
VCPP55072 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCPP55072 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
VCPP55072 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
VCPP55072 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.54■□□□□ 0.72
VCPP55072 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.54■□□□□ 0.72
VCPP55072 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.54■□□□□ 0.72
VCPP55072 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.54■□□□□ 0.72
VCPP55072 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.54■□□□□ 0.72
VCPP55072 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.54■□□□□ 0.72
VCPP55072 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.54■□□□□ 0.72
VCPP55072 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
VCPP55072 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.54■□□□□ 0.72
VCPP55072 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.54■□□□□ 0.72
VCPP55072 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VCPP55072 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.54■□□□□ 0.72
VCPP55072 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
VCPP55072 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCPP55072 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCPP55072 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCPP55072 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCPP55072 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.53■□□□□ 0.72
VCPP55072 AC007613.1-201ENST00000572811 2597 ntBASIC19.53■□□□□ 0.72
VCPP55072 GPAT2P1-201ENST00000444924 1672 ntBASIC19.53■□□□□ 0.72
VCPP55072 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCPP55072 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.53■□□□□ 0.72
VCPP55072 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.53■□□□□ 0.72
VCPP55072 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.53■□□□□ 0.72
VCPP55072 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
VCPP55072 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VCPP55072 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
VCPP55072 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.53■□□□□ 0.72
VCPP55072 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
VCPP55072 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.53■□□□□ 0.72
VCPP55072 AL662844.1-201ENST00000546340 181 ntBASIC19.53■□□□□ 0.72
VCPP55072 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.53■□□□□ 0.72
VCPP55072 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.53■□□□□ 0.72
VCPP55072 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.53■□□□□ 0.72
VCPP55072 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
VCPP55072 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
VCPP55072 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
VCPP55072 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.53■□□□□ 0.72
VCPP55072 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
VCPP55072 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms