Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
COL4A4P53420 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.5■□□□□ 0.71
COL4A4P53420 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
COL4A4P53420 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
COL4A4P53420 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.49■□□□□ 0.71
COL4A4P53420 OR7E14P-202ENST00000530490 1290 ntBASIC19.49■□□□□ 0.71
COL4A4P53420 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 KRT8P50-201ENST00000562022 1438 ntBASIC19.49■□□□□ 0.71
COL4A4P53420 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.49■□□□□ 0.71
COL4A4P53420 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.49■□□□□ 0.71
COL4A4P53420 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
COL4A4P53420 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.49■□□□□ 0.71
COL4A4P53420 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 AC004832.2-201ENST00000426397 482 ntBASIC19.49■□□□□ 0.71
COL4A4P53420 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.49■□□□□ 0.71
COL4A4P53420 ALG1L5P-201ENST00000482043 771 ntBASIC19.49■□□□□ 0.71
COL4A4P53420 RNA5SP415-201ENST00000517246 115 ntBASIC19.49■□□□□ 0.71
COL4A4P53420 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.49■□□□□ 0.71
COL4A4P53420 AL138831.2-201ENST00000606564 490 ntBASIC19.49■□□□□ 0.71
COL4A4P53420 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
COL4A4P53420 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC19.49■□□□□ 0.71
COL4A4P53420 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
COL4A4P53420 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 AC112777.1-201ENST00000540175 1423 ntBASIC19.49■□□□□ 0.71
COL4A4P53420 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL4A4P53420 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.48■□□□□ 0.71
COL4A4P53420 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.48■□□□□ 0.71
COL4A4P53420 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A4P53420 AC018445.3-201ENST00000624177 1945 ntBASIC19.48■□□□□ 0.71
COL4A4P53420 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A4P53420 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.48■□□□□ 0.71
COL4A4P53420 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A4P53420 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.48■□□□□ 0.71
COL4A4P53420 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
COL4A4P53420 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.48■□□□□ 0.71
COL4A4P53420 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
COL4A4P53420 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.48■□□□□ 0.71
COL4A4P53420 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.48■□□□□ 0.71
COL4A4P53420 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.48■□□□□ 0.71
COL4A4P53420 AC008735.5-201ENST00000623544 497 ntBASIC19.48■□□□□ 0.71
COL4A4P53420 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A4P53420 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A4P53420 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A4P53420 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A4P53420 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A4P53420 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A4P53420 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.47■□□□□ 0.71
COL4A4P53420 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.47■□□□□ 0.71
COL4A4P53420 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
COL4A4P53420 AC113404.2-201ENST00000507884 177 ntBASIC19.47■□□□□ 0.71
COL4A4P53420 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.47■□□□□ 0.71
COL4A4P53420 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC19.47■□□□□ 0.71
COL4A4P53420 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.47■□□□□ 0.71
COL4A4P53420 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.47■□□□□ 0.71
COL4A4P53420 AC134684.3-201ENST00000641758 218 ntBASIC19.47■□□□□ 0.71
COL4A4P53420 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A4P53420 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A4P53420 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
COL4A4P53420 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.47■□□□□ 0.71
COL4A4P53420 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.47■□□□□ 0.71
COL4A4P53420 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A4P53420 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A4P53420 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
COL4A4P53420 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A4P53420 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A4P53420 DNAJB3-201ENST00000446806 729 ntBASIC19.46■□□□□ 0.71
COL4A4P53420 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A4P53420 CFL1-212ENST00000531413 636 ntTSL 3 BASIC19.46■□□□□ 0.71
COL4A4P53420 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.46■□□□□ 0.71
COL4A4P53420 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A4P53420 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A4P53420 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A4P53420 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.46■□□□□ 0.71
COL4A4P53420 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A4P53420 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
COL4A4P53420 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A4P53420 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A4P53420 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
COL4A4P53420 TNXA-203ENST00000507684 2038 ntBASIC19.46■□□□□ 0.71
COL4A4P53420 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.46■□□□□ 0.71
COL4A4P53420 AL357033.4-201ENST00000617703 1807 ntBASIC19.46■□□□□ 0.71
COL4A4P53420 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A4P53420 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A4P53420 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A4P53420 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
COL4A4P53420 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A4P53420 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.46■□□□□ 0.71
COL4A4P53420 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms