Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC16.73■□□□□ 0.27
RFC3P40938 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.73■□□□□ 0.27
RFC3P40938 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.73■□□□□ 0.27
RFC3P40938 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.73■□□□□ 0.27
RFC3P40938 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
RFC3P40938 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
RFC3P40938 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.73■□□□□ 0.27
RFC3P40938 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.73■□□□□ 0.27
RFC3P40938 LINC00265-3P-201ENST00000447588 903 ntBASIC16.73■□□□□ 0.27
RFC3P40938 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.73■□□□□ 0.27
RFC3P40938 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.73■□□□□ 0.27
RFC3P40938 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.73■□□□□ 0.27
RFC3P40938 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.73■□□□□ 0.27
RFC3P40938 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
RFC3P40938 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.73■□□□□ 0.27
RFC3P40938 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
RFC3P40938 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC16.73■□□□□ 0.27
RFC3P40938 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
RFC3P40938 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFC3P40938 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.72■□□□□ 0.27
RFC3P40938 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
RFC3P40938 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.72■□□□□ 0.27
RFC3P40938 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.72■□□□□ 0.27
RFC3P40938 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.72■□□□□ 0.27
RFC3P40938 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.72■□□□□ 0.27
RFC3P40938 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.72■□□□□ 0.27
RFC3P40938 AP000867.3-201ENST00000524675 377 ntBASIC16.72■□□□□ 0.27
RFC3P40938 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.72■□□□□ 0.27
RFC3P40938 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.72■□□□□ 0.27
RFC3P40938 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.72■□□□□ 0.27
RFC3P40938 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC16.72■□□□□ 0.27
RFC3P40938 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
RFC3P40938 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
RFC3P40938 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.72■□□□□ 0.27
RFC3P40938 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFC3P40938 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.71■□□□□ 0.27
RFC3P40938 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.71■□□□□ 0.27
RFC3P40938 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 AL163051.1-201ENST00000569214 1512 ntBASIC16.71■□□□□ 0.27
RFC3P40938 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.27
RFC3P40938 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.71■□□□□ 0.27
RFC3P40938 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.71■□□□□ 0.27
RFC3P40938 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.71■□□□□ 0.27
RFC3P40938 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.71■□□□□ 0.27
RFC3P40938 MIR3180-4-201ENST00000582223 153 ntBASIC16.71■□□□□ 0.27
RFC3P40938 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.71■□□□□ 0.27
RFC3P40938 AC024563.2-201ENST00000603282 481 ntBASIC16.71■□□□□ 0.27
RFC3P40938 AL390719.2-201ENST00000606993 987 ntBASIC16.71■□□□□ 0.27
RFC3P40938 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RFC3P40938 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms