Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC30.5■■■□□ 2.47
CUX1P39880 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC30.5■■■□□ 2.47
CUX1P39880 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC30.5■■■□□ 2.47
CUX1P39880 SDCCAG3P1-201ENST00000589292 1150 ntBASIC30.5■■■□□ 2.47
CUX1P39880 COPE-211ENST00000600932 1144 ntTSL 5 BASIC30.5■■■□□ 2.47
CUX1P39880 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC30.5■■■□□ 2.47
CUX1P39880 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC30.5■■■□□ 2.47
CUX1P39880 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
CUX1P39880 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CUX1P39880 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC30.5■■■□□ 2.47
CUX1P39880 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CUX1P39880 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CUX1P39880 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
CUX1P39880 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC30.49■■■□□ 2.47
CUX1P39880 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC30.49■■■□□ 2.47
CUX1P39880 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CUX1P39880 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CUX1P39880 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC30.49■■■□□ 2.47
CUX1P39880 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CUX1P39880 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC30.49■■■□□ 2.47
CUX1P39880 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CUX1P39880 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CUX1P39880 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC30.49■■■□□ 2.47
CUX1P39880 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CUX1P39880 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CUX1P39880 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC30.49■■■□□ 2.47
CUX1P39880 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
CUX1P39880 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
CUX1P39880 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC30.48■■■□□ 2.47
CUX1P39880 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC30.48■■■□□ 2.47
CUX1P39880 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
CUX1P39880 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CUX1P39880 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC30.48■■■□□ 2.47
CUX1P39880 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CUX1P39880 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC30.48■■■□□ 2.47
CUX1P39880 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC30.48■■■□□ 2.47
CUX1P39880 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC30.48■■■□□ 2.47
CUX1P39880 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CUX1P39880 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC30.48■■■□□ 2.47
CUX1P39880 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC30.47■■■□□ 2.47
CUX1P39880 INIP-202ENST00000374236 874 ntTSL 2 BASIC30.47■■■□□ 2.47
CUX1P39880 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC30.47■■■□□ 2.47
CUX1P39880 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC30.47■■■□□ 2.47
CUX1P39880 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC30.47■■■□□ 2.47
CUX1P39880 BX005266.1-201ENST00000473402 457 ntBASIC30.47■■■□□ 2.47
CUX1P39880 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
CUX1P39880 AC132938.6-201ENST00000623828 1655 ntBASIC30.47■■■□□ 2.47
CUX1P39880 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC30.47■■■□□ 2.47
CUX1P39880 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC30.47■■■□□ 2.47
CUX1P39880 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC30.47■■■□□ 2.47
CUX1P39880 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CUX1P39880 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CUX1P39880 COA5-202ENST00000409997 557 ntTSL 4 BASIC30.47■■■□□ 2.47
CUX1P39880 HNRNPA1P28-201ENST00000424481 961 ntBASIC30.47■■■□□ 2.47
CUX1P39880 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC30.47■■■□□ 2.47
CUX1P39880 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
CUX1P39880 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC30.47■■■□□ 2.47
CUX1P39880 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CUX1P39880 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
CUX1P39880 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC30.46■■■□□ 2.47
CUX1P39880 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
CUX1P39880 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
CUX1P39880 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC30.46■■■□□ 2.47
CUX1P39880 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC30.46■■■□□ 2.47
CUX1P39880 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
CUX1P39880 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
CUX1P39880 RPS8P6-201ENST00000426177 609 ntBASIC30.46■■■□□ 2.47
CUX1P39880 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC30.46■■■□□ 2.47
CUX1P39880 AC064836.3-201ENST00000607928 673 ntBASIC30.46■■■□□ 2.47
CUX1P39880 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC30.46■■■□□ 2.47
CUX1P39880 PMPCAP1-201ENST00000508114 1576 ntBASIC30.46■■■□□ 2.47
CUX1P39880 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC30.46■■■□□ 2.47
CUX1P39880 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC30.45■■■□□ 2.47
CUX1P39880 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CUX1P39880 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC30.45■■■□□ 2.47
CUX1P39880 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC30.45■■■□□ 2.47
CUX1P39880 AC023274.1-201ENST00000418278 595 ntBASIC30.45■■■□□ 2.47
CUX1P39880 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
CUX1P39880 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC30.45■■■□□ 2.47
CUX1P39880 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC30.45■■■□□ 2.47
CUX1P39880 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC30.45■■■□□ 2.47
CUX1P39880 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
CUX1P39880 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
CUX1P39880 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CUX1P39880 AC007952.6-201ENST00000573168 2673 ntBASIC30.44■■■□□ 2.46
CUX1P39880 AC003957.1-201ENST00000625108 2673 ntBASIC30.44■■■□□ 2.46
CUX1P39880 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC30.44■■■□□ 2.46
CUX1P39880 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC30.44■■■□□ 2.46
CUX1P39880 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC30.44■■■□□ 2.46
CUX1P39880 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC30.44■■■□□ 2.46
CUX1P39880 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC30.44■■■□□ 2.46
CUX1P39880 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC30.44■■■□□ 2.46
CUX1P39880 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CUX1P39880 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CUX1P39880 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC30.44■■■□□ 2.46
CUX1P39880 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CUX1P39880 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CUX1P39880 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC30.44■■■□□ 2.46
CUX1P39880 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC30.44■■■□□ 2.46
CUX1P39880 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC30.44■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms