Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
SMARCA1P28370 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 BICD1-207ENST00000551848 1962 ntBASIC20.94■□□□□ 0.94
SMARCA1P28370 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMARCA1P28370 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
SMARCA1P28370 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
SMARCA1P28370 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCA1P28370 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.93■□□□□ 0.94
SMARCA1P28370 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCA1P28370 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCA1P28370 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.93■□□□□ 0.94
SMARCA1P28370 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.93■□□□□ 0.94
SMARCA1P28370 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCA1P28370 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCA1P28370 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.93■□□□□ 0.94
SMARCA1P28370 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.93■□□□□ 0.94
SMARCA1P28370 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.93■□□□□ 0.94
SMARCA1P28370 AC120498.9-201ENST00000339021 3867 ntBASIC20.93■□□□□ 0.94
SMARCA1P28370 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCA1P28370 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.93■□□□□ 0.94
SMARCA1P28370 AL096828.2-201ENST00000567259 1965 ntBASIC20.93■□□□□ 0.94
SMARCA1P28370 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.93■□□□□ 0.94
SMARCA1P28370 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.93■□□□□ 0.94
SMARCA1P28370 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.93■□□□□ 0.94
SMARCA1P28370 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.93■□□□□ 0.94
SMARCA1P28370 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCA1P28370 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMARCA1P28370 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCA1P28370 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCA1P28370 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.92■□□□□ 0.94
SMARCA1P28370 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCA1P28370 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCA1P28370 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCA1P28370 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.92■□□□□ 0.94
SMARCA1P28370 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCA1P28370 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
SMARCA1P28370 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.92■□□□□ 0.94
SMARCA1P28370 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SMARCA1P28370 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.92■□□□□ 0.94
SMARCA1P28370 AL592071.1-201ENST00000611956 408 ntBASIC20.92■□□□□ 0.94
SMARCA1P28370 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.92■□□□□ 0.94
SMARCA1P28370 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.92■□□□□ 0.94
SMARCA1P28370 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.92■□□□□ 0.94
SMARCA1P28370 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCA1P28370 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.92■□□□□ 0.94
SMARCA1P28370 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCA1P28370 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.92■□□□□ 0.94
SMARCA1P28370 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCA1P28370 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCA1P28370 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCA1P28370 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
SMARCA1P28370 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCA1P28370 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMARCA1P28370 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCA1P28370 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCA1P28370 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCA1P28370 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCA1P28370 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
SMARCA1P28370 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCA1P28370 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCA1P28370 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCA1P28370 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCA1P28370 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCA1P28370 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.91■□□□□ 0.94
SMARCA1P28370 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCA1P28370 AC246785.2-201ENST00000432512 513 ntBASIC20.91■□□□□ 0.94
SMARCA1P28370 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCA1P28370 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMARCA1P28370 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.91■□□□□ 0.94
SMARCA1P28370 TPSP2-201ENST00000561760 610 ntBASIC20.91■□□□□ 0.94
SMARCA1P28370 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.9■□□□□ 0.94
SMARCA1P28370 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.9■□□□□ 0.94
SMARCA1P28370 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.9■□□□□ 0.94
SMARCA1P28370 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
SMARCA1P28370 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.9■□□□□ 0.94
SMARCA1P28370 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.9■□□□□ 0.94
SMARCA1P28370 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.9■□□□□ 0.94
SMARCA1P28370 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SMARCA1P28370 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.9■□□□□ 0.94
SMARCA1P28370 AP002414.4-201ENST00000589764 1148 ntBASIC20.9■□□□□ 0.94
SMARCA1P28370 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 AC124864.1-201ENST00000623408 392 ntBASIC20.9■□□□□ 0.94
SMARCA1P28370 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.9■□□□□ 0.94
SMARCA1P28370 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCA1P28370 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms