Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDC1P18827 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDC1P18827 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.43■□□□□ 0.38
SDC1P18827 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.43■□□□□ 0.38
SDC1P18827 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.43■□□□□ 0.38
SDC1P18827 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.43■□□□□ 0.38
SDC1P18827 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.43■□□□□ 0.38
SDC1P18827 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.43■□□□□ 0.38
SDC1P18827 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDC1P18827 AC010653.2-201ENST00000623505 997 ntBASIC17.43■□□□□ 0.38
SDC1P18827 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDC1P18827 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDC1P18827 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.43■□□□□ 0.38
SDC1P18827 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDC1P18827 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDC1P18827 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SDC1P18827 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDC1P18827 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.43■□□□□ 0.38
SDC1P18827 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SDC1P18827 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.43■□□□□ 0.38
SDC1P18827 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.43■□□□□ 0.38
SDC1P18827 LINC00896-202ENST00000609602 2128 ntBASIC17.42■□□□□ 0.38
SDC1P18827 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
SDC1P18827 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.42■□□□□ 0.38
SDC1P18827 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.42■□□□□ 0.38
SDC1P18827 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.42■□□□□ 0.38
SDC1P18827 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.42■□□□□ 0.38
SDC1P18827 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.42■□□□□ 0.38
SDC1P18827 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.42■□□□□ 0.38
SDC1P18827 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.42■□□□□ 0.38
SDC1P18827 AP006294.2-201ENST00000641667 209 ntBASIC17.42■□□□□ 0.38
SDC1P18827 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.42■□□□□ 0.38
SDC1P18827 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.42■□□□□ 0.38
SDC1P18827 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.42■□□□□ 0.38
SDC1P18827 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.42■□□□□ 0.38
SDC1P18827 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
SDC1P18827 KRT17P2-201ENST00000300992 1314 ntBASIC17.42■□□□□ 0.38
SDC1P18827 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.42■□□□□ 0.38
SDC1P18827 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SDC1P18827 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SDC1P18827 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC1P18827 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SDC1P18827 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.42■□□□□ 0.38
SDC1P18827 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
SDC1P18827 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.41■□□□□ 0.38
SDC1P18827 AL024508.2-201ENST00000607749 1894 ntBASIC17.41■□□□□ 0.38
SDC1P18827 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.41■□□□□ 0.38
SDC1P18827 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
SDC1P18827 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SDC1P18827 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.41■□□□□ 0.38
SDC1P18827 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
SDC1P18827 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
SDC1P18827 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 AC009065.1-201ENST00000564055 1225 ntBASIC17.41■□□□□ 0.38
SDC1P18827 MIR3180-4-201ENST00000582223 153 ntBASIC17.41■□□□□ 0.38
SDC1P18827 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.41■□□□□ 0.38
SDC1P18827 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.41■□□□□ 0.38
SDC1P18827 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.41■□□□□ 0.38
SDC1P18827 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SDC1P18827 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC1P18827 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.4■□□□□ 0.38
SDC1P18827 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
SDC1P18827 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SDC1P18827 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SDC1P18827 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
SDC1P18827 KRT8P9-201ENST00000558927 1449 ntBASIC17.4■□□□□ 0.38
SDC1P18827 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC1P18827 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms