Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.91■□□□□ 0.62
HMGA1P17096 AC106795.1-205ENST00000512851 1056 ntBASIC18.91■□□□□ 0.62
HMGA1P17096 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
HMGA1P17096 SLC25A6P4-201ENST00000586535 553 ntBASIC18.91■□□□□ 0.62
HMGA1P17096 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.91■□□□□ 0.62
HMGA1P17096 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGA1P17096 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGA1P17096 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGA1P17096 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGA1P17096 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.91■□□□□ 0.62
HMGA1P17096 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGA1P17096 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGA1P17096 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
HMGA1P17096 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGA1P17096 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.91■□□□□ 0.62
HMGA1P17096 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGA1P17096 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 TP73-AS1-210ENST00000637775 1455 ntBASIC18.9■□□□□ 0.62
HMGA1P17096 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGA1P17096 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.9■□□□□ 0.62
HMGA1P17096 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGA1P17096 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.9■□□□□ 0.62
HMGA1P17096 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGA1P17096 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGA1P17096 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
HMGA1P17096 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
HMGA1P17096 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.9■□□□□ 0.62
HMGA1P17096 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.9■□□□□ 0.62
HMGA1P17096 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
HMGA1P17096 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HMGA1P17096 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 AC125634.1-201ENST00000438758 1403 ntBASIC18.9■□□□□ 0.62
HMGA1P17096 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGA1P17096 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HMGA1P17096 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.89■□□□□ 0.62
HMGA1P17096 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.89■□□□□ 0.62
HMGA1P17096 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
HMGA1P17096 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HMGA1P17096 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.89■□□□□ 0.62
HMGA1P17096 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
HMGA1P17096 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HMGA1P17096 AC132938.6-201ENST00000623828 1655 ntBASIC18.89■□□□□ 0.61
HMGA1P17096 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGA1P17096 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
HMGA1P17096 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGA1P17096 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HMGA1P17096 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGA1P17096 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGA1P17096 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGA1P17096 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
HMGA1P17096 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGA1P17096 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.89■□□□□ 0.61
HMGA1P17096 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
HMGA1P17096 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.89■□□□□ 0.61
HMGA1P17096 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
HMGA1P17096 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.89■□□□□ 0.61
HMGA1P17096 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGA1P17096 AP000974.1-201ENST00000623909 2387 ntBASIC18.89■□□□□ 0.61
HMGA1P17096 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGA1P17096 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGA1P17096 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.88■□□□□ 0.61
HMGA1P17096 MRPL3P1-201ENST00000400109 1033 ntBASIC18.88■□□□□ 0.61
HMGA1P17096 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
HMGA1P17096 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.88■□□□□ 0.61
HMGA1P17096 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.88■□□□□ 0.61
HMGA1P17096 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.88■□□□□ 0.61
HMGA1P17096 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGA1P17096 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
HMGA1P17096 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 AC073592.3-201ENST00000625118 1834 ntBASIC18.88■□□□□ 0.61
HMGA1P17096 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGA1P17096 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms