Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.78■□□□□ 0.44
HOXC4P09017 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
HOXC4P09017 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.78■□□□□ 0.44
HOXC4P09017 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.78■□□□□ 0.44
HOXC4P09017 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.78■□□□□ 0.44
HOXC4P09017 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.78■□□□□ 0.44
HOXC4P09017 AC112698.1-201ENST00000510299 916 ntBASIC17.78■□□□□ 0.44
HOXC4P09017 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.78■□□□□ 0.44
HOXC4P09017 AL138831.2-201ENST00000606564 490 ntBASIC17.78■□□□□ 0.44
HOXC4P09017 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.78■□□□□ 0.44
HOXC4P09017 AC093010.1-201ENST00000473625 1624 ntBASIC17.78■□□□□ 0.44
HOXC4P09017 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
HOXC4P09017 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.78■□□□□ 0.44
HOXC4P09017 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.78■□□□□ 0.44
HOXC4P09017 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HOXC4P09017 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HOXC4P09017 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
HOXC4P09017 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HOXC4P09017 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC4P09017 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC4P09017 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC4P09017 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC4P09017 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC4P09017 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.77■□□□□ 0.44
HOXC4P09017 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC4P09017 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.77■□□□□ 0.44
HOXC4P09017 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.77■□□□□ 0.44
HOXC4P09017 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC4P09017 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HOXC4P09017 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC4P09017 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC4P09017 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC4P09017 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.77■□□□□ 0.44
HOXC4P09017 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.77■□□□□ 0.44
HOXC4P09017 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.77■□□□□ 0.44
HOXC4P09017 DUTP2-201ENST00000519164 463 ntBASIC17.77■□□□□ 0.44
HOXC4P09017 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC4P09017 MIR5100-201ENST00000579544 119 ntBASIC17.77■□□□□ 0.44
HOXC4P09017 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
HOXC4P09017 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.77■□□□□ 0.44
HOXC4P09017 AC114341.1-201ENST00000618070 349 ntBASIC17.77■□□□□ 0.44
HOXC4P09017 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
HOXC4P09017 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.77■□□□□ 0.44
HOXC4P09017 AC125634.1-201ENST00000438758 1403 ntBASIC17.77■□□□□ 0.44
HOXC4P09017 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.77■□□□□ 0.44
HOXC4P09017 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
HOXC4P09017 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
HOXC4P09017 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.77■□□□□ 0.43
HOXC4P09017 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
HOXC4P09017 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HOXC4P09017 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.76■□□□□ 0.43
HOXC4P09017 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HOXC4P09017 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
HOXC4P09017 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.76■□□□□ 0.43
HOXC4P09017 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.76■□□□□ 0.43
HOXC4P09017 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.76■□□□□ 0.43
HOXC4P09017 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.76■□□□□ 0.43
HOXC4P09017 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.76■□□□□ 0.43
HOXC4P09017 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.76■□□□□ 0.43
HOXC4P09017 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.76■□□□□ 0.43
HOXC4P09017 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
HOXC4P09017 AC026396.1-201ENST00000419388 421 ntBASIC17.76■□□□□ 0.43
HOXC4P09017 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.76■□□□□ 0.43
HOXC4P09017 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.76■□□□□ 0.43
HOXC4P09017 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.76■□□□□ 0.43
HOXC4P09017 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 AC132938.6-201ENST00000623828 1655 ntBASIC17.76■□□□□ 0.43
HOXC4P09017 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC4P09017 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms