Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
COL4A1P02462 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL4A1P02462 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL4A1P02462 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC22.28■■□□□ 1.16
COL4A1P02462 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
COL4A1P02462 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC22.28■■□□□ 1.16
COL4A1P02462 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC22.28■■□□□ 1.16
COL4A1P02462 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
COL4A1P02462 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC22.28■■□□□ 1.16
COL4A1P02462 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL4A1P02462 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC22.28■■□□□ 1.16
COL4A1P02462 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL4A1P02462 RNPS1P1-201ENST00000507437 918 ntBASIC22.27■■□□□ 1.16
COL4A1P02462 AC112698.1-201ENST00000510299 916 ntBASIC22.27■■□□□ 1.16
COL4A1P02462 PGAM5P1-201ENST00000518923 814 ntBASIC22.27■■□□□ 1.16
COL4A1P02462 GPALPP1-207ENST00000611650 899 ntBASIC22.27■■□□□ 1.16
COL4A1P02462 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL4A1P02462 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL4A1P02462 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL4A1P02462 AL031598.1-201ENST00000561511 1773 ntBASIC22.27■■□□□ 1.16
COL4A1P02462 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC22.27■■□□□ 1.16
COL4A1P02462 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL4A1P02462 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC22.27■■□□□ 1.16
COL4A1P02462 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL4A1P02462 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL4A1P02462 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL4A1P02462 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC22.27■■□□□ 1.16
COL4A1P02462 ESPNP-201ENST00000270691 2015 ntBASIC22.27■■□□□ 1.16
COL4A1P02462 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL4A1P02462 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC22.27■■□□□ 1.16
COL4A1P02462 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.15
COL4A1P02462 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A1P02462 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
COL4A1P02462 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
COL4A1P02462 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A1P02462 RPS2P1-201ENST00000434010 821 ntBASIC22.26■■□□□ 1.15
COL4A1P02462 KRT18P65-201ENST00000439811 1286 ntBASIC22.26■■□□□ 1.15
COL4A1P02462 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC22.26■■□□□ 1.15
COL4A1P02462 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
COL4A1P02462 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC22.26■■□□□ 1.15
COL4A1P02462 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC22.26■■□□□ 1.15
COL4A1P02462 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC22.26■■□□□ 1.15
COL4A1P02462 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A1P02462 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC22.26■■□□□ 1.15
COL4A1P02462 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A1P02462 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A1P02462 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC22.26■■□□□ 1.15
COL4A1P02462 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A1P02462 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A1P02462 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC22.26■■□□□ 1.15
COL4A1P02462 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
COL4A1P02462 SCARNA2-201ENST00000458748 420 ntBASIC22.26■■□□□ 1.15
COL4A1P02462 AC145285.3-201ENST00000564603 959 ntBASIC22.26■■□□□ 1.15
COL4A1P02462 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A1P02462 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
COL4A1P02462 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC22.26■■□□□ 1.15
COL4A1P02462 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC22.26■■□□□ 1.15
COL4A1P02462 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A1P02462 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A1P02462 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A1P02462 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC22.25■■□□□ 1.15
COL4A1P02462 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A1P02462 SLC25A24-204ENST00000569674 2357 ntBASIC22.25■■□□□ 1.15
COL4A1P02462 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A1P02462 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC22.25■■□□□ 1.15
COL4A1P02462 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
COL4A1P02462 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A1P02462 ABCD1P5-201ENST00000445663 754 ntBASIC22.25■■□□□ 1.15
COL4A1P02462 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A1P02462 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A1P02462 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC22.25■■□□□ 1.15
COL4A1P02462 AC139530.3-201ENST00000620344 690 ntBASIC22.25■■□□□ 1.15
COL4A1P02462 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A1P02462 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
COL4A1P02462 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
COL4A1P02462 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
COL4A1P02462 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC22.25■■□□□ 1.15
COL4A1P02462 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC22.25■■□□□ 1.15
COL4A1P02462 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A1P02462 AC010460.3-201ENST00000511359 1579 ntBASIC22.25■■□□□ 1.15
COL4A1P02462 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A1P02462 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC22.24■■□□□ 1.15
COL4A1P02462 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A1P02462 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A1P02462 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
COL4A1P02462 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
COL4A1P02462 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC22.24■■□□□ 1.15
COL4A1P02462 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A1P02462 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC22.24■■□□□ 1.15
COL4A1P02462 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC22.24■■□□□ 1.15
COL4A1P02462 AC116407.3-201ENST00000623905 1129 ntBASIC22.24■■□□□ 1.15
COL4A1P02462 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A1P02462 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A1P02462 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC22.24■■□□□ 1.15
COL4A1P02462 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A1P02462 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC22.24■■□□□ 1.15
COL4A1P02462 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A1P02462 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC22.24■■□□□ 1.15
COL4A1P02462 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC22.24■■□□□ 1.15
COL4A1P02462 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms