Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
SEMA3DO95025 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SEMA3DO95025 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SEMA3DO95025 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SEMA3DO95025 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.52■□□□□ 0.4
SEMA3DO95025 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.52■□□□□ 0.4
SEMA3DO95025 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.52■□□□□ 0.4
SEMA3DO95025 SEC1P-202ENST00000473944 940 ntBASIC17.52■□□□□ 0.4
SEMA3DO95025 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.52■□□□□ 0.4
SEMA3DO95025 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.52■□□□□ 0.4
SEMA3DO95025 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
SEMA3DO95025 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SEMA3DO95025 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SEMA3DO95025 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SEMA3DO95025 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SEMA3DO95025 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.52■□□□□ 0.39
SEMA3DO95025 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SEMA3DO95025 ESPNP-201ENST00000270691 2015 ntBASIC17.52■□□□□ 0.39
SEMA3DO95025 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SEMA3DO95025 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SEMA3DO95025 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SEMA3DO95025 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SEMA3DO95025 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SEMA3DO95025 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
SEMA3DO95025 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.51■□□□□ 0.39
SEMA3DO95025 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SEMA3DO95025 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SEMA3DO95025 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SEMA3DO95025 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SEMA3DO95025 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
SEMA3DO95025 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SEMA3DO95025 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SEMA3DO95025 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SEMA3DO95025 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SEMA3DO95025 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.51■□□□□ 0.39
SEMA3DO95025 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
SEMA3DO95025 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
SEMA3DO95025 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.51■□□□□ 0.39
SEMA3DO95025 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.51■□□□□ 0.39
SEMA3DO95025 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
SEMA3DO95025 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.51■□□□□ 0.39
SEMA3DO95025 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
SEMA3DO95025 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.51■□□□□ 0.39
SEMA3DO95025 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.51■□□□□ 0.39
SEMA3DO95025 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
SEMA3DO95025 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.51■□□□□ 0.39
SEMA3DO95025 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SEMA3DO95025 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.51■□□□□ 0.39
SEMA3DO95025 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SEMA3DO95025 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.5■□□□□ 0.39
SEMA3DO95025 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.5■□□□□ 0.39
SEMA3DO95025 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
SEMA3DO95025 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.5■□□□□ 0.39
SEMA3DO95025 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.5■□□□□ 0.39
SEMA3DO95025 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.5■□□□□ 0.39
SEMA3DO95025 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.5■□□□□ 0.39
SEMA3DO95025 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.5■□□□□ 0.39
SEMA3DO95025 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.5■□□□□ 0.39
SEMA3DO95025 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.5■□□□□ 0.39
SEMA3DO95025 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.5■□□□□ 0.39
SEMA3DO95025 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SEMA3DO95025 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.5■□□□□ 0.39
SEMA3DO95025 AC073912.3-201ENST00000624414 853 ntBASIC17.5■□□□□ 0.39
SEMA3DO95025 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SEMA3DO95025 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.5■□□□□ 0.39
SEMA3DO95025 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
SEMA3DO95025 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.5■□□□□ 0.39
SEMA3DO95025 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
SEMA3DO95025 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.5■□□□□ 0.39
SEMA3DO95025 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.5■□□□□ 0.39
SEMA3DO95025 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.5■□□□□ 0.39
SEMA3DO95025 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.5■□□□□ 0.39
SEMA3DO95025 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
SEMA3DO95025 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.5■□□□□ 0.39
SEMA3DO95025 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SEMA3DO95025 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SEMA3DO95025 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.49■□□□□ 0.39
SEMA3DO95025 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.49■□□□□ 0.39
SEMA3DO95025 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.49■□□□□ 0.39
SEMA3DO95025 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 151.2 ms